BMRB: 10018

1H Chemical Shift Assignments for LINE RNA

Authors

Nomura, Y., Baba, S., Nakazato, S., Sakamoto, T., Kajikawa, M., Okada, N., Kawai, G.

Assembly

RNA hairpin of eel LINE

Entity

1. RNA hairpin of eel LINE (polymer, Thiol state: not present), 36 monomers, 11622.83 Da Detail

GGUUGUACGU CGCUUUGGAU AAAAGCGUCU GCGACC

Formula weight

11622.83 Da

Source organism

Anguilla japonica

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 56.7 %, Completeness (bb): 54.2 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polyribonucleotide

	Total	1H
All	56.7 % (178 of 314)	56.7 % (178 of 314)
Suger, PO4	54.2 % (117 of 216)	54.2 % (117 of 216)
Nucleobase	62.2 % (61 of 98)	62.2 % (61 of 98)
Aromatic	74.4 % (61 of 82)	74.4 % (61 of 82)

1. LINE36

GGUUGUACGU CGCUUUGGAU AAAAGCGUCU GCGACC

Show sample condition

Sample

Temperature 293 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	LINE36			1.0 (±0.1) mM

Hide sample codition

Release date

2006-11-20

Citation

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2
Nomura, Y., Kajikawa, M., Baba, S., Nakazato, S., Imai, T., Sakamoto, T., Okada, N., Kawai, G.
Nucleic Acids Res. (2006), 34, 5184-5193, PubMed 17000640 , DOI 10.1093/nar/gkl664 , Abstract

Related entities 1. RNA hairpin of eel LINE, : 1 entities Detail

Experiments performed 9 experiments Detail