BMRB: 10066

Solution structure of the third PDZ domain of human KIAA1526 protein

Authors

Tochio, N., Kobayashi, N., Koshiba, S., Kigawa, T., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nakayama, M., Yokoyama, S.

Assembly

KIAA1526 protein

Entity

1. KIAA1526 protein (polymer, Thiol state: all free), 103 monomers, 10842.16 Da Detail

GSSGSSGTLV RVKKSAATLG IAIEGGANTR QPLPRIVTIQ RGGSAHNCGQ LKVGHVILEV NGLTLRGKEH REAARIIAEA FKTKDRDYID FLVTEFNSGP SSG

Formula weight

10842.16 Da

Source organism

Homo sapiens

Exptl. method

NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.2 %, Completeness: 92.0 %, Completeness (bb): 88.6 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	92.0 % (1040 of 1131)	92.3 % (541 of 586)	93.4 % (409 of 438)	84.1 % (90 of 107)
Backbone	88.6 % (542 of 612)	88.5 % (192 of 217)	90.5 % (267 of 295)	83.0 % (83 of 100)
Sidechain	95.7 % (582 of 608)	94.6 % (349 of 369)	97.4 % (226 of 232)	100.0 % (7 of 7)
Aromatic	100.0 % (50 of 50)	100.0 % (25 of 25)	100.0 % (25 of 25)
Methyl	100.0 % (124 of 124)	100.0 % (62 of 62)	100.0 % (62 of 62)

1. PDZ domain

GSSGSSGTLV RVKKSAATLG IAIEGGANTR QPLPRIVTIQ RGGSAHNCGQ LKVGHVILEV NGLTLRGKEH REAARIIAEA FKTKDRDYID FLVTEFNSGP SSG

Show sample condition

Sample

Pressure 1 (±0.001) atm, Temperature 298 (±0.1) K, pH 7.0 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	PDZ domain	[U-13C; U-15N]		1.2 mM
2	d-Tris HCl		buffer	20 mM
3	NaCl		salt	100 mM
4	d-DTT		salt	1 mM
5	NaN3			0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: 0.11 ppm, Outliers: 4 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: 0.11 ppm, Outliers: 4 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.07 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.11 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1UFX, Strand ID: A Detail

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Release date

2008-08-13

Citation

Solution structure of the third PDZ domain of human KIAA1526 protein
Tochio, N., Kobayashi, N., Koshiba, S., Kigawa, T., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nakayama, M., Yokoyama, S.

Related entities 1. KIAA1526 protein, : 1 : 1 : 127 entities Detail

Interaction partners 1. KIAA1526 protein, : 3 interactors Detail

Experiments performed 2 experiments Detail