BMRB: 10092

Solution structure of the DEATH domain of Interleukin-1 receptor-associated kinase4 (IRAK4) from Mus musculus

Authors

Nameki, N., Tomizawa, T., Koshiba, S., Kigawa, T., Yokoyama, S.

Assembly

interleukin-1 receptor-associated kinase 4

Entity

1. interleukin-1 receptor-associated kinase 4 (polymer, Thiol state: all free), 127 monomers, 13755.59 Da Detail

GSSGSSGMNK PLTPSTYIRN LNVGILRKLS DFIDPQEGWK KLAVAIKKPS GDDRYNQFHI RRFEALLQTG KSPTCELLFD WGTTNCTVGD LVDLLVQIEL FAPATLLLPD AVPQTVKSLP PSGPSSG

Formula weight

13755.59 Da

Source organism

Mus musculus

Exptl. method

NMR

Refine. method

torsion angle dynamics, restrained molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.3 %, Completeness: 93.1 %, Completeness (bb): 92.2 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	93.1 % (1362 of 1463)	92.8 % (706 of 761)	94.1 % (540 of 574)	90.6 % (116 of 128)
Backbone	92.2 % (682 of 740)	91.7 % (233 of 254)	92.7 % (343 of 370)	91.4 % (106 of 116)
Sidechain	94.2 % (790 of 839)	93.3 % (473 of 507)	95.9 % (307 of 320)	83.3 % (10 of 12)
Aromatic	91.5 % (86 of 94)	89.4 % (42 of 47)	93.3 % (42 of 45)	100.0 % (2 of 2)
Methyl	100.0 % (150 of 150)	100.0 % (75 of 75)	100.0 % (75 of 75)

1. DEATH domain

GSSGSSGMNK PLTPSTYIRN LNVGILRKLS DFIDPQEGWK KLAVAIKKPS GDDRYNQFHI RRFEALLQTG KSPTCELLFD WGTTNCTVGD LVDLLVQIEL FAPATLLLPD AVPQTVKSLP PSGPSSG

Show sample condition

Sample

Pressure 1 (±0.001) atm, Temperature 296 (±0.1) K, pH 7.5 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	DEATH domain	[U-13C; U-15N]		0.7 mM
2	d-Tris-HCl		buffer	20 mM
3	NaCl		salt	100 mM
4	d-DTT		salt	1 mM
5	NaN3			0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.07 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.07 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: 0.01 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: -0.23 ppm, Outliers: 3 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1WH4, Strand ID: A Detail

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Release date

2008-08-13

Citation

Metal ion-mediated reduction in surface entropy improves diffraction quality of crystals of the IRAK-4 death domain
Nameki, N., Tomizawa, T., Koshiba, S., Kigawa, T., Yokoyama, S.
J. Biomol. Tech. (2006), 17, 114-121, PubMed 16741238 , DOI: , Abstract

Related entities 1. interleukin-1 receptor-associated kinase 4, : 1 : 3 : 16 entities Detail

Interaction partners 1. interleukin-1 receptor-associated kinase 4, : 9 interactors Detail

Experiments performed 2 experiments Detail