BMRB: 10274

Solution structures of the fn3 domain of human collagen alpha-1(XX) chain

Authors

Sato, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

Assembly

Collagen alpha-1(XX) chain

Entity

1. Collagen alpha-1(XX) chain (polymer, Thiol state: all free), 105 monomers, 10593.65 Da Detail

GSSGSSGRSP PSNLALASET PDSLQVSWTP PLGRVLHYWL TYAPASGLGP EKSVSVPGAR SHVTLPDLQA ATKYRVLVSA IYAAGRSEAV SATGQTACPS GPSSG

Formula weight

10593.65 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.2 %, Completeness: 93.7 %, Completeness (bb): 91.6 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	93.7 % (1024 of 1093)	94.1 % (526 of 559)	92.9 % (403 of 434)	95.0 % (95 of 100)
Backbone	91.6 % (557 of 608)	92.9 % (195 of 210)	89.8 % (273 of 304)	94.7 % (89 of 94)
Sidechain	95.9 % (555 of 579)	94.8 % (331 of 349)	97.3 % (218 of 224)	100.0 % (6 of 6)
Aromatic	98.4 % (63 of 64)	96.9 % (31 of 32)	100.0 % (30 of 30)	100.0 % (2 of 2)
Methyl	100.0 % (116 of 116)	100.0 % (58 of 58)	100.0 % (58 of 58)

1. Fibronectin type III domain

GSSGSSGRSP PSNLALASET PDSLQVSWTP PLGRVLHYWL TYAPASGLGP EKSVSVPGAR SHVTLPDLQA ATKYRVLVSA IYAAGRSEAV SATGQTACPS GPSSG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 296 (±0.1) K, pH 7.0 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	fn3 domain	[U-13C; U-15N]	protein	1 mM
2	d-Tris HCl		buffer	20 mM
3	NaCl		salt	100 mM
4	d-DTT		salt	1 mM
5	NaN3		salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: 0.08 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: 0.08 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.1 ppm, Outliers: 3 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.78 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 2EKJ, Strand ID: A Detail

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Release date

2009-12-13

Citation

Solution structures of the fn3 domain of human collagen alpha-1(XX) chain
Sato, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

Related entities 1. Collagen alpha-1(XX) chain, : 1 : 415 entities Detail

Interaction partners 1. Collagen alpha-1(XX) chain, : 3 interactors Detail

Experiments performed 2 experiments Detail