BMRB: 10286

Solution structure of the homeobox domain of the hypothetical protein, DKFZp686K21156

Authors

Ohnishi, S., Kigawa, T., Saito, K., Koshiba, S., Inoue, M., Yokoyama, S.

Assembly

Hypothetical protein DKFZp686K21156

Entity

1. Hypothetical protein DKFZp686K21156 (polymer, Thiol state: all free), 80 monomers, 8812.797 Da Detail

GSSGSSGALQ DRTQFSDRDL ATLKKYWDNG MTSLGSVCRE KIEAVATELN VDCEIVRTWI GNRRRKYRLM GIEVSGPSSG

Formula weight

8812.797 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

torsion angle dynamics, restrained molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 93.8 %, Completeness: 92.8 %, Completeness (bb): 91.0 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	92.8 % (826 of 890)	91.2 % (423 of 464)	95.6 % (325 of 340)	90.7 % (78 of 86)
Backbone	91.0 % (435 of 478)	88.1 % (148 of 168)	93.5 % (216 of 231)	89.9 % (71 of 79)
Sidechain	95.0 % (459 of 483)	92.9 % (275 of 296)	98.3 % (177 of 180)	100.0 % (7 of 7)
Aromatic	100.0 % (50 of 50)	100.0 % (25 of 25)	100.0 % (23 of 23)	100.0 % (2 of 2)
Methyl	98.7 % (77 of 78)	97.4 % (38 of 39)	100.0 % (39 of 39)

1. homeobox domain

GSSGSSGALQ DRTQFSDRDL ATLKKYWDNG MTSLGSVCRE KIEAVATELN VDCEIVRTWI GNRRRKYRLM GIEVSGPSSG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 298 (±0.1) K, pH 7.0 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	homeobox domain	[U-13C; U-15N]	protein	1.0 mM
2	d-Tris-HCl		buffer	20 mM
3	NaCl		salt	100 mM
4	d-DTT		salt	1 mM
5	NaN3		salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.14 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.14 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: 0.0 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: -0.09 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 2DA4, Strand ID: A Detail

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Release date

2009-12-16

Citation

Solution structure of the homeobox domain of the hypothetical protein, DKFZp686K21156
Ohnishi, S., Kigawa, T., Saito, K., Koshiba, S., Inoue, M., Yokoyama, S.

Related entities 1. Hypothetical protein DKFZp686K21156, : 1 : 6 : 55 entities Detail

Interaction partners 1. Hypothetical protein DKFZp686K21156, : 1 interactors Detail

Experiments performed 2 experiments Detail