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Found 1 Document (4.917 seconds)

BMRB: 11076

2RQK

NMR based model structure of mesoderm development (MESD) in solution.

Authors

Koehler, C., Lighthouse, J.K., Werther, T., Andersen, O.M., Diehl, A., Schmieder, P., Holdener, B.C., Oschkinat, H.

Assembly

MESD core region

Entity

1. MESD core region (polymer, Thiol state: all free), 141 monomers, 16128.95 Da Detail

GDIRDYNDAD MARLLEQWEK DDDIEEGDLP EHKRPSAPID FSKLDPGKPE SILKMTKKGK TLMMFVTVSG NPTEKETEEI TSLWQGSLFN ANYDVQRFIV GSDRAIFMLR DGSYAWEIKD FLVSQDRCAE VTLEGQMYPG K

Formula weight

16128.95 Da

Source organism

Mus musculus

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts, heteronucl_T1_relaxation, heteronucl_T2_relaxation, RDCs

Chem. Shift Complete

Sequence coverage: 96.5 %, Completeness: 81.1 %, Completeness (bb): 89.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	81.1 % (1346 of 1659)	83.9 % (730 of 870)	74.8 % (481 of 643)	92.5 % (135 of 146)
Backbone	89.3 % (743 of 832)	88.4 % (252 of 285)	88.9 % (367 of 413)	92.5 % (124 of 134)
Sidechain	75.6 % (724 of 958)	81.7 % (478 of 585)	65.1 % (235 of 361)	91.7 % (11 of 12)
Aromatic	68.2 % (90 of 132)	78.8 % (52 of 66)	55.6 % (35 of 63)	100.0 % (3 of 3)
Methyl	82.0 % (105 of 128)	95.3 % (61 of 64)	68.8 % (44 of 64)

1. MESD polymer chain

GDIRDYNDAD MARLLEQWEK DDDIEEGDLP EHKRPSAPID FSKLDPGKPE SILKMTKKGK TLMMFVTVSG NPTEKETEEI TSLWQGSLFN ANYDVQRFIV GSDRAIFMLR DGSYAWEIKD FLVSQDRCAE VTLEGQMYPG K

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
8	MESD	[U-100% 13C; U-100% 15N]	1 mM
9	sodium phosphate	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	sodium azide	natural abundance	0.02 %
12	EDTA	natural abundance	0.1 mM
13	D2O		100 %

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: 0.08 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: 0.08 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: -0.04 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: 0.15 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2RQK, Strand ID: A Detail

Heteronucl. T₁

94 T₁ values in 1 lists
Coherence Sz, Field strength (¹H) 599.9799 MHz, Pressure 1 atm, Temperature 300 K, pH 5.5 Detail

Heteronucl. T₂

94 T₂ values in 1 lists
Coherence S(+,-), Field strength (¹H) 599.9799 MHz, Pressure 1 atm, Temperature 300 K, pH 5.5 Detail

Heteronucl. T₁/T₂

94 T₁/T₂ values in 1 lists
Field strength (¹H) 599.9799 MHz, Pressure 1 atm, Temperature 300 K, pH 5.5 Detail

RDC

36 RDC values in 1 lists
Field strength (¹H) 599.9799 MHz, Pressure 1 atm, Temperature 300 K, pH 5.5 Detail

Release date

2011-06-02

Citation

The structure of MESD45-184 brings light into the mechanism of LDLR family folding
Kohler, C., Lighthouse, J.K., Werther, T., Andersen, O.M., Diehl, A., Schmieder, P., Du, J., Holdener, B.C., Oschkinat, H.
Structure (2011), 19, 337-348, PubMed 21397185 , DOI 10.1016/j.str.2010.12.022 , Abstract

Entries sharing articles Swiss-Prot: 1 entries Detail

Swiss-Prot: Q9ERE7 released on 2002-10-25
Title MESD_MOUSE Entity LDLR chaperone MESD

Related entities 1. MESD core region, : 1 : 1 : 4 : 11 entities Detail

Interaction partners 1. MESD core region, : 5 interactors Detail

More details for 5 interactors identified by 4 citations

Experiments performed 16 experiments Detail

1 2D 1H-15N HSQC No.1

Instrument

Bruker AV - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

2 2D 1H-15N HSQC No.2

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
21	MESD	[U-100% 15N]	1 mM
22	sodium phosphate	natural abundance	20 mM
23	sodium chloride	natural abundance	50 mM
24	sodium azide	natural abundance	0.02 %
25	EDTA	natural abundance	0.1 mM
26	D2O		100 %

3 2D 1H-13C HSQC

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
8	MESD	[U-100% 13C; U-100% 15N]	1 mM
9	sodium phosphate	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	sodium azide	natural abundance	0.02 %
12	EDTA	natural abundance	0.1 mM
13	D2O		100 %

4 3D CBCA(CO)NH

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

5 3D CBCANNH

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

6 3D HNCO

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

7 3D HNCACO

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

8 3D HCCH-TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
8	MESD	[U-100% 13C; U-100% 15N]	1 mM
9	sodium phosphate	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	sodium azide	natural abundance	0.02 %
12	EDTA	natural abundance	0.1 mM
13	D2O		100 %

9 3D HCCH-COSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
8	MESD	[U-100% 13C; U-100% 15N]	1 mM
9	sodium phosphate	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	sodium azide	natural abundance	0.02 %
12	EDTA	natural abundance	0.1 mM
13	D2O		100 %

10 3D H(CCCO)NH-TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

11 3D (H)CC(CO)NH-TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	MESD	[U-100% 13C; U-100% 15N]	1 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	0.02 %
5	EDTA	natural abundance	0.1 mM
6	H2O		90 %
7	D2O		10 %

12 3D 1H-15N NOESY

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

13 3D 1H-13C NOESY

Instrument

Bruker DMX - 750 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
8	MESD	[U-100% 13C; U-100% 15N]	1 mM
9	sodium phosphate	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	sodium azide	natural abundance	0.02 %
12	EDTA	natural abundance	0.1 mM
13	D2O		100 %

14 2D 1H-15N HSQC coupled

Instrument

Bruker DRX - 600 MHz

Sample

State anisotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

15 2D 1H-15N HSQC 15N_T1-edited

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

16 2D 1H-15N HSQC 15N_T2-edited

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 5.5

#	Name	Isotope labeling	Concentration
14	MESD	[U-100% 15N]	1 mM
15	sodium phosphate	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	sodium azide	natural abundance	0.02 %
18	EDTA	natural abundance	0.1 mM
19	H2O		90 %
20	D2O		10 %

nullKeywords chaperone

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Found 1 Document (4.917 seconds)

BMRB: 11076

Sample #1

Sample #2

Sample #3

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Entries sharing articles Swiss-Prot: 1 entries Detail

Related entities 1. MESD core region, : 1 : 1 : 4 : 11 entities Detail

Interaction partners 1. MESD core region, : 5 interactors Detail

Experiments performed 16 experiments Detail

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