BMRB: 11182

Solution structure of the PDZ domain of human KIAA0340 protein

Authors

Inoue, K., Qin, X., Hayashi, F., Yokoyama, S.

Assembly

Regulating synaptic membrane exocytosis protein 1

Entity

1. Regulating synaptic membrane exocytosis protein 1 (polymer, Thiol state: not present), 121 monomers, 12681.35 Da Detail

GSSGSSGVTW QPSKEGDRLI GRVILNKRTT MPKDSGALLG LKVVGGKMTD LGRLGAFITK VKKGSLADVV GHLRAGDEVL EWNGKPLPGA TNEEVYNIIL ESKSEPQVEI IVSRPSGPSS G

Formula weight

12681.35 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

Torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.2 %, Completeness: 97.7 %, Completeness (bb): 96.8 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	97.7 % (1313 of 1344)	97.4 % (683 of 701)	98.7 % (514 of 521)	95.1 % (116 of 122)
Backbone	96.8 % (689 of 712)	96.4 % (244 of 253)	98.0 % (338 of 345)	93.9 % (107 of 114)
Sidechain	96.9 % (712 of 735)	96.2 % (431 of 448)	97.8 % (273 of 279)	100.0 % (8 of 8)
Aromatic	100.0 % (46 of 46)	100.0 % (23 of 23)	100.0 % (21 of 21)	100.0 % (2 of 2)
Methyl	99.3 % (141 of 142)	98.6 % (70 of 71)	100.0 % (71 of 71)

1. PDZ domain

GSSGSSGVTW QPSKEGDRLI GRVILNKRTT MPKDSGALLG LKVVGGKMTD LGRLGAFITK VKKGSLADVV GHLRAGDEVL EWNGKPLPGA TNEEVYNIIL ESKSEPQVEI IVSRPSGPSS G

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 293 (±0.1) K, pH 7.0 (±0.05), Details 1.33mM U-15N,13C-labeled {protein;} 20mM {d-Tris-HCl;} 100mM {NaCl;} 1mM {d-DTT;} 0.02% {NaN3;} 10% D2O

#	Name	Isotope labeling	Type	Concentration
1	PDZ domain	[U-13C; U-15N]	protein	1.33 mM
2	d-Tris-HCl	natural abundance	buffer	20 mM
3	NaCl	natural abundance	salt	100 mM
4	d-DTT	natural abundance	salt	1 mM
5	NaN3	natural abundance	salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: 0.06 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: 0.06 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.05 ppm, Outliers: 4 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: -0.05 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 2CSS, Strand ID: A Detail

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Release date

2011-07-19

Citation

Solution structure of the PDZ domain of human KIAA0340 protein
Inoue, K., Qin, X., Hayashi, F., Yokoyama, S.

Related entities 1. Regulating synaptic membrane exocytosis protein 1, : 1 : 2 : 46 entities Detail

Interaction partners 1. Regulating synaptic membrane exocytosis protein 1, : 2 interactors Detail

Experiments performed 2 experiments Detail