BMRB: 11200

Solution structure of the PDZ domain of Pals1 protein

Authors

Qin, X., Hayashi, F., Yokoyama, S.

Assembly

MAGUK p55 subfamily member 5

Entity

1. MAGUK p55 subfamily member 5 (polymer, Thiol state: not present), 113 monomers, 11936.25 Da Detail

GSSGSSGPIT DERVYESIGH YGGETVKIVR IEKARDIPLG ATVRNEMDSV IISRIVKGGA AEKSGLLHEG DEVLEINGIE IRGKDVNEVF DLLSDMHGTL TFVLIPSSGP SSG

Formula weight

11936.25 Da

Source organism

Mus musculus

Exptl. method

solution NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.1 %, Completeness: 98.6 %, Completeness (bb): 98.5 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	98.6 % (1209 of 1226)	98.3 % (621 of 632)	99.2 % (478 of 482)	98.2 % (110 of 112)
Backbone	98.5 % (660 of 670)	97.5 % (232 of 238)	99.4 % (321 of 323)	98.2 % (107 of 109)
Sidechain	98.9 % (646 of 653)	98.7 % (389 of 394)	99.2 % (254 of 256)	100.0 % (3 of 3)
Aromatic	91.7 % (44 of 48)	91.7 % (22 of 24)	91.7 % (22 of 24)
Methyl	100.0 % (138 of 138)	100.0 % (69 of 69)	100.0 % (69 of 69)

1. PDZ domain

GSSGSSGPIT DERVYESIGH YGGETVKIVR IEKARDIPLG ATVRNEMDSV IISRIVKGGA AEKSGLLHEG DEVLEINGIE IRGKDVNEVF DLLSDMHGTL TFVLIPSSGP SSG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 298 (±0.1) K, pH 6.0 (±0.05), Details 1.05mM 13C, 15N-labeled {protein;} 20mM {PiNa(pH6.0);} 100mM {NaCl;} {1mMd10-DTT;} 0.02% NaN3

#	Name	Isotope labeling	Type	Concentration
1	PDZ domain	[U-13C; U-15N]	protein	1.05 mM
2	PiNa	natural abundance	buffer	20 mM
3	NaCl	natural abundance	salt	100 mM
4	d10-DTT	natural abundance	salt	1 mM
5	NaN3	natural abundance	salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.15 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.15 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.03 ppm, Outliers: 5 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.27 ppm, Outliers: 3 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1VA8, Strand ID: A Detail

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Release date

2011-07-20

Citation

Solution structure of the PDZ domain of Pals1 protein
Qin, X., Hayashi, F., Yokoyama, S.

Related entities 1. MAGUK p55 subfamily member 5, : 1 : 7 : 18 entities Detail

Interaction partners 1. MAGUK p55 subfamily member 5, : 5 interactors Detail

Experiments performed 2 experiments Detail