BMRB: 11215

Solution structure of the PDZ domain of T-cell lymphoma invasion and metastasis 1 varian

Authors

Qin, X., Hayashi, F., Yokoyama, S.

Assembly

T-cell lymphoma invasion and metastasis 1 variant

Entity

1. T-cell lymphoma invasion and metastasis 1 variant (polymer, Thiol state: all free), 114 monomers, 12036.19 Da Detail

GSSGSSGEIE ICPKVTQSIH IEKSDTAADT YGFSLSSVEE DGIRRLYVNS VKETGLASKK GLKAGDEILE INNRAADALN SSMLKDFLSQ PSLGLLVRTY PELEEGVESG PSSG

Formula weight

12036.19 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 96.5 %, Completeness: 96.8 %, Completeness (bb): 95.3 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	96.8 % (1199 of 1238)	97.2 % (623 of 641)	97.5 % (469 of 481)	92.2 % (107 of 116)
Backbone	95.3 % (644 of 676)	95.3 % (225 of 236)	96.4 % (318 of 330)	91.8 % (101 of 110)
Sidechain	98.6 % (655 of 664)	98.3 % (398 of 405)	99.2 % (251 of 253)	100.0 % (6 of 6)
Aromatic	100.0 % (48 of 48)	100.0 % (24 of 24)	100.0 % (24 of 24)
Methyl	100.0 % (124 of 124)	100.0 % (62 of 62)	100.0 % (62 of 62)

1. PDZ domain

GSSGSSGEIE ICPKVTQSIH IEKSDTAADT YGFSLSSVEE DGIRRLYVNS VKETGLASKK GLKAGDEILE INNRAADALN SSMLKDFLSQ PSLGLLVRTY PELEEGVESG PSSG

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Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 298 (±0.1) K, pH 7.0 (±0.05), Details 1.29mM 13C,15N-labeled {protein;} 20mM {d-Tris-HCl(pH7.0);} 100mM {NaCl;} 1mM {d-DTT;} 0.02% {NaN3;}

#	Name	Isotope labeling	Type	Concentration
1	PDZ domain	[U-13C; U-15N]	protein	1.29 mM
2	d-Tris-HCl	natural abundance	buffer	20 mM
3	NaCl	natural abundance	salt	100 mM
4	d-DTT	natural abundance	salt	1 mM
5	NaN3	natural abundance	salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.1 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.1 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.07 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.19 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 2D8I, Strand ID: A Detail

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Release date

2011-07-20

Citation

Solution structure of the PDZ domain of T-cell lymphoma invasion and metastasis 1 varian
Qin, X., Hayashi, F., Yokoyama, S.

Related entities 1. T-cell lymphoma invasion and metastasis 1 variant, : 1 : 2 : 41 entities Detail

Interaction partners 1. T-cell lymphoma invasion and metastasis 1 variant, : 15 interactors Detail

Experiments performed 2 experiments Detail