BMRB: 11290

Solution structure of the fibronectin type-III domain of human fibronectin type III domain containing protein 3

Authors

Yoneyama, M., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

Assembly

Fibronectin type-III domain containing protein 3a

Entity

1. Fibronectin type-III domain containing protein 3a (polymer, Thiol state: all free), 109 monomers, 11668.76 Da Detail

GSSGSSGPSM PASPVLTKAG ITWLSLQWSK PSGTPSDEGI SYILEMEEET SGYGFKPKYD GEDLAYTVKN LRRSTKYKFK VIAYNSEGKS NPSEVVEFTT CPDSGPSSG

Formula weight

11668.76 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.7 %, Completeness: 93.2 %, Completeness (bb): 90.6 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	93.2 % (1130 of 1212)	93.7 % (591 of 631)	93.3 % (443 of 475)	90.6 % (96 of 106)
Backbone	90.6 % (576 of 636)	91.0 % (201 of 221)	90.5 % (285 of 315)	90.0 % (90 of 100)
Sidechain	95.7 % (644 of 673)	95.1 % (390 of 410)	96.5 % (248 of 257)	100.0 % (6 of 6)
Aromatic	100.0 % (102 of 102)	100.0 % (51 of 51)	100.0 % (49 of 49)	100.0 % (2 of 2)
Methyl	100.0 % (84 of 84)	100.0 % (42 of 42)	100.0 % (42 of 42)

1. Fibronectin type-III domain

GSSGSSGPSM PASPVLTKAG ITWLSLQWSK PSGTPSDEGI SYILEMEEET SGYGFKPKYD GEDLAYTVKN LRRSTKYKFK VIAYNSEGKS NPSEVVEFTT CPDSGPSSG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 296 (±0.1) K, pH 7.0 (±0.05), Details 1.06mM fn3 domain U-15N, {13C;} 20mM d-Tris-HCl {(pH7.0);} 100mM {NaCl;} 1mM {d-DTT;} 0.02% {NaN3;} 10% D2O

#	Name	Isotope labeling	Type	Concentration
1	fn3 domain	[U-13C; U-15N]	protein	1.06 mM
2	d-Tris-HCl	natural abundance	buffer	20 mM
3	NaCl	natural abundance	salt	100 mM
4	d-DTT	natural abundance	salt	1 mM
5	NaN3	natural abundance	salt	0.02 %
6	H2O		solvent	90 %
7	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.11 ppm, Outliers: 7 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.11 ppm, Outliers: 7 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.03 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.59 ppm, Outliers: 7 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1X5X, Strand ID: A Detail

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Release date

2011-08-17

Citation

Solution structure of the fibronectin type-III domain of human fibronectin type III domain containing protein 3
Yoneyama, M., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

Related entities 1. Fibronectin type-III domain containing protein 3a, : 1 : 3 : 340 entities Detail

Interaction partners 1. Fibronectin type-III domain containing protein 3a, : 27 interactors Detail

Experiments performed 2 experiments Detail