BMRB: 11356

Solution structure of SH3 domain in Rac/Cdc42 guanine nucleotide exchange factor(GEF) 6

Authors

He, F., Muto, Y., Uda, H., Koshiba, S., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nagayama, M., Yokoyama, S.

Assembly

Rho guanine nucleotide exchange factor 6

Entity

1. Rho guanine nucleotide exchange factor 6 (polymer, Thiol state: all free), 76 monomers, 8355.032 Da Detail

GSSGSSGSHQ LIVKARFNFK QTNEDELSVC KGDIIYVTRV EEGGWWEGTL NGRTGWFPSN YVREIKSSER SGPSSG

Formula weight

8355.032 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 90.8 %, Completeness: 91.7 %, Completeness (bb): 89.4 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	91.7 % (785 of 856)	91.7 % (409 of 446)	92.7 % (303 of 327)	88.0 % (73 of 83)
Backbone	89.4 % (404 of 452)	89.4 % (144 of 161)	88.9 % (193 of 217)	90.5 % (67 of 74)
Sidechain	94.2 % (442 of 469)	93.0 % (265 of 285)	97.7 % (171 of 175)	66.7 % (6 of 9)
Aromatic	100.0 % (86 of 86)	100.0 % (43 of 43)	100.0 % (40 of 40)	100.0 % (3 of 3)
Methyl	100.0 % (58 of 58)	100.0 % (29 of 29)	100.0 % (29 of 29)

1. SH3 domain

GSSGSSGSHQ LIVKARFNFK QTNEDELSVC KGDIIYVTRV EEGGWWEGTL NGRTGWFPSN YVREIKSSER SGPSSG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 (±0.001) atm, Temperature 298 (±0.1) K, pH 6.0 (±0.05), Details 0.8mM SH3 U-15N, {13C;} 20mM phosphate buffer {NA;} 100mM {NaCl;} 0.02% {NaN3;} 90%H2O, 10%D2O

#	Name	Isotope labeling	Type	Concentration
1	SH3 domain	[U-13C; U-15N]	protein	0.8 mM
2	phosphate buffer NA	natural abundance	buffer	20 mM
3	NaCl	natural abundance	salt	100 mM
4	NaN3	natural abundance	salt	0.02 %
5	H2O		solvent	90 %
6	D2O		solvent	10 %

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LACS Plot; CA

Referencing offset: -0.12 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.12 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: -0.06 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.53 ppm, Outliers: 2 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	DSS	methyl protons	0.0 ppm	null	indirect	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1UJY, Strand ID: A Detail

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Release date

2011-09-06

Citation

Solution structure of SH3 domain in Rac/Cdc42 guanine nucleotide exchange factor(GEF) 6
He, F., Muto, Y., Uda, H., Koshiba, S., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nagayama, M., Yokoyama, S.

Related entities 1. Rho guanine nucleotide exchange factor 6, : 1 : 146 entities Detail

Interaction partners 1. Rho guanine nucleotide exchange factor 6, : 19 interactors Detail

Experiments performed 2 experiments Detail