BMRB: 11479

Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT

Authors

Tochio, N., Umehara, T., Kigawa, T., Yokoyama, S.

Assembly

protein

Entity

1. protein (polymer, Thiol state: all other bound), 38 monomers, 4007.461 Da Detail

GSSGSSGILL KCPTDGCDYS TPDKYKLQAH LKVHTALD

2. ZINC ION (non-polymer), 65.409 Da

Total weight

4072.8699 Da

Max. entity weight

4007.461 Da

Entity Connection

na 4 Detail

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ID	Type	Value order	Atom ID 1	Atom ID 2
1	na	sing	1:CYS12:SG	2:ZN1:ZN
2	na	sing	1:CYS17:SG	2:ZN1:ZN
3	na	sing	1:HIS30:NE2	2:ZN1:ZN
4	na	sing	1:HIS34:NE2	2:ZN1:ZN

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

DGSA-distance geometry simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 84.2 %, Completeness: 83.9 %, Completeness (bb): 78.6 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	83.9 % (344 of 410)	82.9 % (175 of 211)	85.8 % (139 of 162)	81.1 % (30 of 37)
Backbone	78.6 % (176 of 224)	75.6 % (59 of 78)	80.0 % (88 of 110)	80.6 % (29 of 36)
Sidechain	89.5 % (197 of 220)	87.2 % (116 of 133)	93.0 % (80 of 86)	100.0 % (1 of 1)
Aromatic	100.0 % (24 of 24)	100.0 % (12 of 12)	100.0 % (12 of 12)
Methyl	97.4 % (37 of 38)	94.7 % (18 of 19)	100.0 % (19 of 19)

1. protein

GSSGSSGILL KCPTDGCDYS TPDKYKLQAH LKVHTALD

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 296 K, pH 7.0

#	Name	Isotope labeling	Type	Concentration
1	protein	[U-13C; U-15N]	protein	1.16 mM
2	TRIS	[U-2H]		20 mM
3	sodium chloride	natural abundance		100 mM
4	DTT	[U-2H]		1 mM
5	sodium azide	natural abundance		0.02 %
6	zinc chloride	natural abundance		50 uM
7	H2O		solvent	90 %
8	D2O		solvent	10 %

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Protein Blocks Logo

Calculated from 20 models in PDB: 2RUZ, Strand ID: A Detail

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Release date

2015-01-19

Citation

Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
Tochio, N., Umehara, T., Kigawa, T., Yokoyama, S.
J. Struct. Funct. Genomics (2015), 16, 55-65, PubMed 25801860 , DOI 10.1007/s10969-015-9196-3 , Abstract

Related entities 1. protein, : 1 : 1 : 5 : 28 entities Detail

Interaction partners 1. protein, : 2 interactors Detail

Experiments performed 2 experiments Detail