BMRB: 15108

NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC).

Authors

Galloux, M., Libersou, S., Morellet, N., Bouaziz, S., Ouldali, M., Da Costa, B., Lepault, J., Delmas, B.

Assembly

p1

Entity

1. p1 (polymer, Thiol state: not present), 46 monomers, 4876.609 Da Detail

FGFKDIIRAI RRIAVPVVST LFPPAAPLAH AIGEGVDYLL GDEAQA

Formula weight

4876.609 Da

Source organism

Infectious bursal disease virus

Exptl. method

solution NMR

Refine. method

distance geometry, simulated annealing, energy minimization

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.8 %, Completeness: 93.6 %, Completeness (bb): 97.8 % Detail

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Polymer type: polypeptide(L)

	Total	1H
All	93.6 % (248 of 265)	93.6 % (248 of 265)
Backbone	97.8 % (90 of 92)	97.8 % (90 of 92)
Sidechain	91.3 % (158 of 173)	91.3 % (158 of 173)
Aromatic	61.9 % (13 of 21)	61.9 % (13 of 21)
Methyl	100.0 % (35 of 35)	100.0 % (35 of 35)

1. IBDV p1 peptide

FGFKDIIRAI RRIAVPVVST LFPPAAPLAH AIGEGVDYLL GDEAQA

Show sample condition

Sample

Solvent system 90%H20, 10%D2O, Pressure 1 atm, Temperature 333 K, pH 3.5, Details 1mM pep46; 40mM DPC; 90%H2O, 10%D2O

#	Name	Isotope labeling	Type	Concentration
1	pep46	natural abundance		1 mM
2	DPC	natural abundance		40 mM

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Protein Blocks Logo

Calculated from 13 models in PDB: 2IMU, Strand ID: A Detail

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Release date

2007-10-16

Citation

Infectious bursal disease virus, a non-enveloped virus, possesses a capsid-associated peptide that deforms and perforates biological membranes
Galloux, M., Libersou, S., Morellet, N., Bouaziz, S., Da Costa, B., Ouldali, M., Lepault, J., Delmas, B.
J. Biol. Chem. (2007), 282, 20774-20784, PubMed 17488723 , DOI 10.1074/jbc.M701048200 , Abstract

Related entities 1. p1, : 1 : 6 : 1 : 1 : 65 entities Detail

Experiments performed 2 experiments Detail