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NMR Structure of Protein YfgJ from Salmonella Typhimurium. Northeast Structural Genomics Target StR86.
Authors
Ding, K., Ramelot, T.A., Cort, J.R., Wang, H., Nwosu, C., Cunningham, K., Owens, L., Ma, L., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A.
Assembly
YfgJ monomer
Entity
1. protein (polymer, Thiol state: free and other bound), 81 monomers, 9144.318 Da Detail

MEITCPVCHH ALERNGDTAH CETCAKDFSL QALCPDCRQP LQVLKACGAV DYFCQNGHGL ISKKRVNFVI SDQLEHHHHH H


2. ZN (non-polymer), 65.409 × 2 Da
Total weight
9275.137 Da
Max. entity weight
9144.318 Da
Entity Connection
na 8 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1nasing1:CYS5:SG2:ZN1:ZN
2nasing1:CYS8:SG2:ZN1:ZN
3nasing1:CYS21:SG2:ZN1:ZN
4nasing1:CYS24:SG2:ZN1:ZN
5nasing1:CYS34:SG2:ZN1:ZN
6nasing1:CYS37:SG2:ZN1:ZN
7nasing1:CYS54:SG2:ZN1:ZN
8nasing1:HIS58:NE22:ZN1:ZN

Source organism
Salmonella enterica subsp. enterica serovar Typhimurium
Exptl. method
solution NMR
Refine. method
DGSA-distance geometry simulated annealing
Data set
assigned_chemical_shifts, spectral_peak_list
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 91.6 %, Completeness (bb): 96.7 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All91.6 % (838 of 915)91.5 % (433 of 473)92.7 % (330 of 356)87.2 % (75 of 86)
Backbone96.7 % (464 of 480)97.5 % (159 of 163)96.7 % (231 of 239)94.9 % (74 of 78)
Sidechain88.1 % (451 of 512)88.4 % (274 of 310)90.7 % (176 of 194)12.5 % (1 of 8)
Aromatic59.0 % (46 of 78)59.0 % (23 of 39)59.0 % (23 of 39)
Methyl100.0 % (78 of 78)100.0 % (39 of 39)100.0 % (39 of 39)

1. protein

MEITCPVCHH ALERNGDTAH CETCAKDFSL QALCPDCRQP LQVLKACGAV DYFCQNGHGL ISKKRVNFVI SDQLEHHHHH H

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 (±1) atm, Temperature 293 (±1) K, pH 4.5 (±0.2)


#NameIsotope labelingTypeConcentration
1protein[U-100% 13C; U-100% 15N]1 (±0.2) mM
2NH4OAcnatural abundance20 (±1.0) mM
3NaClnatural abundance100 (±5.0) mM
4DTTnatural abundance10 (±1.0) mM
5CaCl2natural abundance5 (±1.0) mM
6NaN3natural abundance0.02 (±0.001) %
7H2O95 %
8D2O5 %
Sample #2

Solvent system 100% D2O, Pressure 1 (±1) atm, Temperature 293 (±1) K, pH 4.5 (±0.2)


#NameIsotope labelingTypeConcentration
9protein[U-100% 13C; U-100% 15N]1 (±0.2) mM
10NH4OAcnatural abundance20 (±1.0) mM
11NaClnatural abundance100 (±5.0) mM
12DTTnatural abundance10 (±1.0) mM
13CaCl2natural abundance5 (±1.0) mM
14NaN3natural abundance0.02 (±0.001) %
15D2O100 %
Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 (±1) atm, Temperature 293 (±1) K, pH 4.5 (±0.2)


#NameIsotope labelingTypeConcentration
16protein[U-5% 13C; U-100% 15N]1.7 (±0.2) mM
17NH4OAcnatural abundance20 (±1.0) mM
18NaClnatural abundance100 (±5.0) mM
19DTTnatural abundance10 (±1.0) mM
20CaCl2natural abundance5 (±1.0) mM
21NaN3natural abundance0.02 (±0.001) %
22H2O95 %
23D2O5 %

LACS Plot; CA
Referencing offset: 0.03 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: 0.03 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.52 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2JRP, Strand ID: A Detail


Release date
2007-08-01
Citation
NMR Structure of Protein YfgJ from Salmonella Typhimurium
Ding, K., Ramelot, T.A., Cort, J.R., Wang, H., Nwosu, C., Cunningham, K., Owens, L., Ma, L., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A.
Related entities 1. protein, : 1 : 7 entities Detail
Experiments performed 16 experiments Detail
NMR combined restraints 5 contents Detail
Keywords two-zinc binding protein