BMRBj - BMREntryMaster

	Total	¹H	¹³C	¹⁵N
All	85.1 % (633 of 744)	85.6 % (332 of 388)	84.7 % (244 of 288)	83.8 % (57 of 68)
Backbone	86.9 % (337 of 388)	85.8 % (115 of 134)	88.4 % (168 of 190)	84.4 % (54 of 64)
Sidechain	82.2 % (342 of 416)	81.9 % (208 of 254)	82.9 % (131 of 158)	75.0 % (3 of 4)
Aromatic	62.1 % (36 of 58)	72.4 % (21 of 29)	50.0 % (14 of 28)	100.0 % (1 of 1)
Methyl	96.9 % (62 of 64)	96.9 % (31 of 32)	96.9 % (31 of 32)

1. RPA3401

MATADDFKLI RDIHSTGGRR QVFGSREQKP FEDLVDLGWL KRSSVDSRAT HYQITERGTS AALRS

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
6	RHA3401	[U-13C; U-15N]	0.6 mM
7	NaCl	natural abundance	300 mM
8	TRIS	[U-99% 2H]	10 mM
9	Benzamidine	natural abundance	1 mM
10	NaN3	natural abundance	0.01 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.04 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.04 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 3 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.12 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2JTV, Strand ID: A Detail

Release date

2007-08-12

Citation

Solution Structure of protein RPA3401, Northeast Structural Genomics Consortium Target RpT7, Ontario Center for Structural Proteomics Target RP3384
Ignatchenko, A., Gutmanas, A., Lemak, A., Yee, A., Karra, M., Srisailam, S., Arrowsmith, C.

Related entities 1. RPA3401, : 1 : 5 entities Detail

Experiments performed 13 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

2 2D 1H-13C HSQC

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

3 3D HNCO

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

4 3D HNCA

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

5 3D CBCA(CO)NH

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

6 3D 1H-15N NOESY

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

7 3D 1H-13C NOESY

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

8 3D (H)CCH TOCSY

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
6	RHA3401	[U-13C; U-15N]	0.6 mM
7	NaCl	natural abundance	300 mM
8	TRIS	[U-99% 2H]	10 mM
9	Benzamidine	natural abundance	1 mM
10	NaN3	natural abundance	0.01 %

9 3D H(C)CH TOCSY

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
6	RHA3401	[U-13C; U-15N]	0.6 mM
7	NaCl	natural abundance	300 mM
8	TRIS	[U-99% 2H]	10 mM
9	Benzamidine	natural abundance	1 mM
10	NaN3	natural abundance	0.01 %

10 4D(PR) HBHACBCA(CO)NH

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

11 4D(PR) HCC(CO)NH TOCSY

Instrument

Bruker Avance - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

12 3D 1H-13C NOESY

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
6	RHA3401	[U-13C; U-15N]	0.6 mM
7	NaCl	natural abundance	300 mM
8	TRIS	[U-99% 2H]	10 mM
9	Benzamidine	natural abundance	1 mM
10	NaN3	natural abundance	0.01 %

13 3D 1H-13C aromatic NOESY

Instrument

Bruker Avance - 500 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7

#	Name	Isotope labeling	Concentration
1	RHA3401	[U-13C; U-15N]	0.6 mM
2	NaCl	natural abundance	300 mM
3	TRIS	[U-99% 2H]	10 mM
4	Benzamidine	natural abundance	1 mM
5	NaN3	natural abundance	0.01 %

NMR combined restraints 4 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints	combined_15419_2jtv.nef
Input source #2: Coordindates	2jtv.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

--------10--------20--------30--------40--------50--------60-----
MATADDFKLIRDIHSTGGRRQVFGSREQKPFEDLVDLGWLKRSSVDSRATHYQITERGTSAALRS
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MATADDFKLIRDIHSTGGRRQVFGSREQKPFEDLVDLGWLKRSSVDSRATHYQITERGTSAALRS

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	65	0	0	100.0

Content subtype: combined_15419_2jtv.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	644		93.8 (chain: A, length: 65)
1	Distance restraints	CNS/XPLOR_distance_constraints_2	OK	1724 (1)	noe	93.8 (chain: A, length: 65)
1	Dihedral angle restraints	CNS/XPLOR_dihedral_3	OK	96 (96)	.	95.4 (chain: A, length: 65)

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 65, Sequence coverage: 93.8%
- Total number of assignments
  - ¹H chemical shifts: 338
  - ¹³C chemical shifts: 249
  - ¹⁵N chemical shifts: 57
- Completeness of assignments
  - Entity_assemble_ID: A
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	388	338	87.1
¹³C chemical shifts	288	249	86.5
¹⁵N chemical shifts	76	57	75.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	134	119	88.8
¹³C chemical shifts	130	115	88.5
¹⁵N chemical shifts	64	54	84.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	254	219	86.2
¹³C chemical shifts	158	134	84.8
¹⁵N chemical shifts	12	3	25.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	33	31	93.9
¹³C chemical shifts	33	31	93.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	29	21	72.4
¹³C chemical shifts	28	14	50.0
¹⁵N chemical shifts	1	1	100.0

Distance restraints

Saveframe: CNS/XPLOR_distance_constraints_2
- Status: OK
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 65, Sequence coverage: 93.8%
- Total number of restraints: 1724
- Weight of restraints: 1.0 (1724)
- Potential type of restraints: square-well-parabolic (1724)
- Range of distance target values: 2.25, 3.9 (Å)
- Histogram of distance target values
- Distance restraints per residue
  - Chain_ID: A
- Distance restraints on contact map

Dihedral angle restraints

Saveframe: CNS/XPLOR_dihedral_3
- Status: OK
- Experiment type: .
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 65, Sequence coverage: 95.4%
- Total number of restraints: 96
- Total number of restraints per polymer type: 96
- Weight of restraints: 1.0 (96)
- Potential type of restraints: square-well-parabolic (96)
- Plot of Phi-Psi angle restraints
- Dihedral angle restraints per residue
  - Chain_ID: A

Keywords NESG, Northeast Structural Genomics Consortium, PSI-2, Protein with unknown function RPA3401, Structural Genomics

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Found 1 Document (0.645 seconds)

BMRB: 15419

Sample #1

Sample #2

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. RPA3401, : 1 : 5 entities Detail

Experiments performed 13 experiments Detail

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NMR combined restraints 4 contents Detail