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BMRB: 15512

2LQR

1H, 13C, and 15N NMR chemical shift assignments of the palladin Ig3 domain

Authors

Dixon, R.D. S., Rachlin, A.S., Otey, C.A., Campbell, S.L.

Assembly

Palladin Ig3 domain

Entity

1. Palladin Ig3 domain (polymer, Thiol state: all free), 108 monomers, 11974.47 Da Detail

GGSNATAPFF EMKLKHYKIF EGMPVTFTCR VAGNPKPKIY WFKDGKQISP KSDHYTIQRD LDGTCSLHTT ASTLDDDGNY TIMAANPQGR VSCTGRLMVQ AVNQRGRS

Formula weight

11974.47 Da

Source organism

Exptl. method

Refine. method

simulated annealing, torsion angle dynamics, matrix relaxation

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 94.8 %, Completeness (bb): 98.9 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	94.8 % (1173 of 1237)	94.0 % (606 of 645)	95.0 % (455 of 479)	99.1 % (112 of 113)
Backbone	98.9 % (629 of 636)	98.2 % (216 of 220)	99.0 % (311 of 314)	100.0 % (102 of 102)
Sidechain	91.8 % (642 of 699)	91.8 % (390 of 425)	92.0 % (242 of 263)	90.9 % (10 of 11)
Aromatic	84.9 % (90 of 106)	88.7 % (47 of 53)	80.8 % (42 of 52)	100.0 % (1 of 1)
Methyl	95.7 % (90 of 94)	95.7 % (45 of 47)	95.7 % (45 of 47)

1. Palladin Ig3 domain

GGSNATAPFF EMKLKHYKIF EGMPVTFTCR VAGNPKPKIY WFKDGKQISP KSDHYTIQRD LDGTCSLHTT ASTLDDDGNY TIMAANPQGR VSCTGRLMVQ AVNQRGRS

Show sample condition

Sample

Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

LACS Plot; CA

Referencing offset: -0.26 ppm, Outliers: 2 Detail

LACS Plot; CB

Referencing offset: -0.26 ppm, Outliers: 2 Detail

LACS Plot; HA

Referencing offset: -0.06 ppm, Outliers: 1 Detail

LACS Plot; CO

Referencing offset: 0.43 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2LQR, Strand ID: A Detail

Release date

2008-03-30

Citation

1H, 15N, and 13C NMR chemical shift assignments for the Ig3 domain of palladin
Dixon, R.D.S., Campbell, S.L.
Biomol. NMR Assign. (2008), 2, 51-53, PubMed 19636923 , DOI 10.1007/s12104-008-9082-z , Abstract

Related entities 1. Palladin Ig3 domain, : 1 : 2 : 684 entities Detail

Interaction partners 1. Palladin Ig3 domain, : 9 interactors Detail

More details for 9 interactors identified by 3 citations

Experiments performed 13 experiments Detail

1 2D 1H-15N HSQC

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

2 2D 1H-13C HSQC (aliphatic)

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

3 3D HNCACB

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

4 3D HNCO

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

5 3D C(CO)NH TOCSY

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

6 3D HC(CO)NH TOCSY

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

7 3D HCCH-COSY

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

8 3D 1H-15N NOESY

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

9 3D 1H-13C NOESY (aliphatic)

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

10 HBCBCGCDHD

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

11 HBCBCGCDCEHE

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

12 2D 1H-13C HSQC (aromatic)

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

13 3D 1H-13C NOESY (aromatic)

Instrument

Varian INOVA - 700 MHz cryogenic probe

Sample

State isotropic, Pressure 1 atm, Temperature 298 (±0.1) K, pH 6.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Palladin Ig3 domain	[U-98% 13C; U-98% 15N]		0.3-1.8 mM
2	D2O	natural abundance		10 %
3	H2O	natural abundance		90 %
4	TRIS	natural abundance		50 mM
5	sodium chloride	natural abundance		150 mM
6	DTT	natural abundance		2 mM

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