BMRBj - BMREntryMaster

Found 1 Document (1.462 seconds)

BMRB: 15734

2K31

Solution Structure of cGMP-binding GAF domain of Phosphodiesterase 5

Authors

Heikaus, C.C., Stout, J.R., Sekharan, M.R., Eakin, C.M., Rajagopal, P., Brzovic, P.S., Beavo, J.A., Klevit, R.E.

Assembly

Phosphodiesterase 5

Entity

1. mPDE5 GAFA (polymer, Thiol state: all free), 176 monomers, 19938.21 Da Detail

MDVTALCHKI FLHIHGLISA DRYSLFLVCE DSSKDKFLIS RLFDVAEGST LEEASNNCIR LEWNKGIVGH VAAFGEPLNI KDAYEDPRFN AEVDQITGYK TQSILCMPIK NHREEVVGVA QAINKKSGNG GTFTEKDEKD FAEYLAFCGE VLHNAQLYET SLLENKRNLE HHHHHH

2. GUANOSINE-3',5'-MONOPHOSPHATE (non-polymer), 345.205 Da

Total weight

20283.416 Da

Max. entity weight

19938.21 Da

Source organism

Mus musculus

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 93.2 %, Completeness: 78.9 %, Completeness (bb): 87.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	78.9 % (1615 of 2048)	76.6 % (810 of 1058)	80.9 % (648 of 801)	83.1 % (157 of 189)
Backbone	87.2 % (916 of 1050)	87.5 % (315 of 360)	86.3 % (446 of 517)	89.6 % (155 of 173)
Sidechain	73.1 % (850 of 1163)	70.9 % (495 of 698)	78.6 % (353 of 449)	12.5 % (2 of 16)
Aromatic	33.2 % (63 of 190)	35.8 % (34 of 95)	29.8 % (28 of 94)	100.0 % (1 of 1)
Methyl	91.1 % (175 of 192)	87.5 % (84 of 96)	94.8 % (91 of 96)

1. mPDE5 GAFA

MDVTALCHKI FLHIHGLISA DRYSLFLVCE DSSKDKFLIS RLFDVAEGST LEEASNNCIR LEWNKGIVGH VAAFGEPLNI KDAYEDPRFN AEVDQITGYK TQSILCMPIK NHREEVVGVA QAINKKSGNG GTFTEKDEKD FAEYLAFCGE VLHNAQLYET SLLENKRNLE HHHHHH

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
1	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
2	mPDE5_GAFA	natural abundance	0.5 ~ 1.2 mM
3	sodium chloride	natural abundance	150 mM
4	PMSF	natural abundance	1 mM
5	DTT	natural abundance	1-5 mM
6	EDTA	natural abundance	0.1 mM
7	sodium phosphate	natural abundance	25 mM
8	D2O		10 %
9	H2O	natural abundance	90 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
10	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
11	mPDE5_GAFA	[U-100% 15N]	0.5 ~ 1.2 mM
12	sodium chloride	natural abundance	150 mM
13	PMSF	natural abundance	1 mM
14	DTT	natural abundance	1-5 mM
15	EDTA	natural abundance	0.1 mM
16	sodium phosphate	natural abundance	25 mM
17	D2O		10 %
18	H2O	natural abundance	90 %

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
28	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
29	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
30	sodium chloride	natural abundance	150 mM
31	PMSF	natural abundance	1 mM
32	DTT	natural abundance	1-5 mM
33	EDTA	natural abundance	0.1 mM
34	sodium phosphate	natural abundance	25 mM
35	D2O		10 %
36	H2O	natural abundance	90 %

Sample #5

Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
37	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
38	mPDE5_GAFA	[U-100% 15N]	0.5 ~ 1.2 mM
39	sodium chloride	natural abundance	150 mM
40	PMSF	natural abundance	1 mM
41	DTT	natural abundance	1-5 mM
42	EDTA	natural abundance	0.1 mM
43	sodium phosphate	natural abundance	25 mM
44	D2O		100 %

Sample #6

Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
45	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
46	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
47	sodium chloride	natural abundance	150 mM
48	PMSF	natural abundance	1 mM
49	DTT	natural abundance	1-5 mM
50	EDTA	natural abundance	0.1 mM
51	sodium phosphate	natural abundance	25 mM
52	D2O		100 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	external	direct	1.0
¹³C	DSS	methyl protons	external	indirect	0.25145
¹⁵N	DSS	methyl protons	external	indirect	0.10133

Referencing offset: -0.23 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	external	direct	1.0
¹³C	DSS	methyl protons	external	indirect	0.25145
¹⁵N	DSS	methyl protons	external	indirect	0.10133

Referencing offset: -0.23 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	external	direct	1.0
¹³C	DSS	methyl protons	external	indirect	0.25145
¹⁵N	DSS	methyl protons	external	indirect	0.10133

Referencing offset: -0.05 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	external	direct	1.0
¹³C	DSS	methyl protons	external	indirect	0.25145
¹⁵N	DSS	methyl protons	external	indirect	0.10133

Referencing offset: 0.17 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2K31, Strand ID: A Detail

Release date

2008-08-27

Citation

Solution structure of the cGMP binding GAF domain from phosphodiesterase 5: insights into nucleotide specificity, dimerization, and cGMP-dependent conformational change
Heikaus, C.C., Stout, J.R., Sekharan, M.R., Eakin, C.M., Rajagopal, P., Brzovic, P.S., Beavo, J.A., Klevit, R.E.
J. Biol. Chem. (2008), 283, 22749-22759, PubMed 18534985 , DOI 10.1074/jbc.M801577200 , Abstract

Related entities 1. mPDE5 GAFA, : 1 : 118 entities Detail

Interaction partners 1. mPDE5 GAFA, : 3 interactors Detail

More details for 3 interactors identified by 2 citations

Experiments performed 14 experiments Detail

1 2D 1H-15N HSQC

Instrument

Varian INOVA - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
10	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
11	mPDE5_GAFA	[U-100% 15N]	0.5 ~ 1.2 mM
12	sodium chloride	natural abundance	150 mM
13	PMSF	natural abundance	1 mM
14	DTT	natural abundance	1-5 mM
15	EDTA	natural abundance	0.1 mM
16	sodium phosphate	natural abundance	25 mM
17	D2O		10 %
18	H2O	natural abundance	90 %

2 2D 1H-13C HSQC

Instrument

Varian INOVA - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
28	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
29	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
30	sodium chloride	natural abundance	150 mM
31	PMSF	natural abundance	1 mM
32	DTT	natural abundance	1-5 mM
33	EDTA	natural abundance	0.1 mM
34	sodium phosphate	natural abundance	25 mM
35	D2O		10 %
36	H2O	natural abundance	90 %

3 2D 1H-1H NOESY

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
1	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
2	mPDE5_GAFA	natural abundance	0.5 ~ 1.2 mM
3	sodium chloride	natural abundance	150 mM
4	PMSF	natural abundance	1 mM
5	DTT	natural abundance	1-5 mM
6	EDTA	natural abundance	0.1 mM
7	sodium phosphate	natural abundance	25 mM
8	D2O		10 %
9	H2O	natural abundance	90 %

4 3D HNCO

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

5 3D HNCA

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

6 3D HNCACB

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

7 3D CBCA(CO)NH

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

8 3D HCCH-COSY

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
28	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
29	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
30	sodium chloride	natural abundance	150 mM
31	PMSF	natural abundance	1 mM
32	DTT	natural abundance	1-5 mM
33	EDTA	natural abundance	0.1 mM
34	sodium phosphate	natural abundance	25 mM
35	D2O		10 %
36	H2O	natural abundance	90 %

9 3D HN(COCA)CB

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

10 3D HCCH-TOCSY

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
28	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
29	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
30	sodium chloride	natural abundance	150 mM
31	PMSF	natural abundance	1 mM
32	DTT	natural abundance	1-5 mM
33	EDTA	natural abundance	0.1 mM
34	sodium phosphate	natural abundance	25 mM
35	D2O		10 %
36	H2O	natural abundance	90 %

11 3D 1H-15N NOESY

Instrument

Varian INOVA - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
28	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
29	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
30	sodium chloride	natural abundance	150 mM
31	PMSF	natural abundance	1 mM
32	DTT	natural abundance	1-5 mM
33	EDTA	natural abundance	0.1 mM
34	sodium phosphate	natural abundance	25 mM
35	D2O		10 %
36	H2O	natural abundance	90 %

12 3D 1H-13C NOESY

Instrument

Varian INOVA - 900 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
45	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
46	mPDE5_GAFA	[U-100% 13C; U-100% 15N]	0.5 ~ 1.2 mM
47	sodium chloride	natural abundance	150 mM
48	PMSF	natural abundance	1 mM
49	DTT	natural abundance	1-5 mM
50	EDTA	natural abundance	0.1 mM
51	sodium phosphate	natural abundance	25 mM
52	D2O		100 %

13 3D HN(CO)CA

Instrument

Bruker DMX - 500 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
19	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
20	mPDE5_GAFA	[U-100% 13C; U-100% 15N; 80% 2H]	0.5 ~ 1.2 mM
21	sodium chloride	natural abundance	150 mM
22	PMSF	natural abundance	1 mM
23	DTT	natural abundance	1-5 mM
24	EDTA	natural abundance	0.1 mM
25	sodium phosphate	natural abundance	25 mM
26	D2O		10 %
27	H2O	natural abundance	90 %

14 2D 1H-15N HSQC

Instrument

Varian INOVA - 900 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 7

#	Name	Isotope labeling	Concentration
37	GUANOSINE-3',5'-MONOPHOSPHATE	natural abundance	0.5 ~ 1.2 mM
38	mPDE5_GAFA	[U-100% 15N]	0.5 ~ 1.2 mM
39	sodium chloride	natural abundance	150 mM
40	PMSF	natural abundance	1 mM
41	DTT	natural abundance	1-5 mM
42	EDTA	natural abundance	0.1 mM
43	sodium phosphate	natural abundance	25 mM
44	D2O		100 %

NMR combined restraints 5 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints	combined_15734_2k31.nef
Input source #2: Coordindates	2k31.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

Chain_ID	Seq_ID	Comp_ID	Chem_comp_name	Experimental evidences
B	1	35G	GUANOSINE-3',5'-MONOPHOSPHATE	None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

-----160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MDVTALCHKIFLHIHGLISADRYSLFLVCEDSSKDKFLISRLFDVAEGSTLEEASNNCIRLEWNKGIVGHVAAFGEPLNIKDAYEDPRFNAEVDQITGYK
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MDVTALCHKIFLHIHGLISADRYSLFLVCEDSSKDKFLISRLFDVAEGSTLEEASNNCIRLEWNKGIVGHVAAFGEPLNIKDAYEDPRFNAEVDQITGYK
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

-----260-------270-------280-------290-------300-------310-------320--------
TQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAEYLAFCGEVLHNAQLYETSLLENKRNLEHHHHHH
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAEYLAFCGEVLHNAQLYETSLLENKRNLEHHHHHH
-------110-------120-------130-------140-------150-------160-------170------

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	176	0	0	100.0

Content subtype: combined_15734_2k31.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assignments_5GAFA_N-AI	Warning	1619		91.5 (chain: A, length: 176)
1	Distance restraints	CNS/XPLOR_distance_constraints_4	Warning	3038 (1)	noe	83.0 (chain: A, length: 176)
2	Distance restraints	CNS/XPLOR_distance_constraints_2	OK	50 (1)	hbond	36.9 (chain: A, length: 176)
1	Dihedral angle restraints	CNS/XPLOR_dihedral_3	OK	194 (194)	.	75.0 (chain: A, length: 176)

Assigned chemical shifts

Saveframe: assignments_5GAFA_N-AI
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 176, Sequence coverage: 91.5%
- Total number of assignments
  - ¹H chemical shifts: 832
  - ¹³C chemical shifts: 636
  - ¹⁵N chemical shifts: 151
- Completeness of assignments
  - Entity_assemble_ID: A
- Redox state of CYS
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
313	SER	HG	3.96

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	1058	809	76.5
¹³C chemical shifts	801	636	79.4
¹⁵N chemical shifts	195	151	77.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	360	314	87.2
¹³C chemical shifts	352	285	81.0
¹⁵N chemical shifts	173	150	86.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	698	495	70.9
¹³C chemical shifts	449	351	78.2
¹⁵N chemical shifts	22	1	4.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	98	84	85.7
¹³C chemical shifts	98	91	92.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	95	33	34.7
¹³C chemical shifts	94	28	29.8
¹⁵N chemical shifts	1	1	100.0

Distance restraints

Saveframe: CNS/XPLOR_distance_constraints_4
- Status: Warning
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 176, Sequence coverage: 83.0%
- Total number of restraints: 3035
- Weight of restraints: 1.0 (3035)
- Potential type of restraints: square-well-parabolic (3035)
- Range of distance target values: 2.65, 4.15 (Å)
- Histogram of distance target values
- Histogram of discrepancy in distance target values
- Distance restraints per residue
  - Chain_ID: A
  - Chain_ID: B
    None
- Distance restraints on contact map
- Saveframe: CNS/XPLOR_distance_constraints_2
  - Status: OK
  - Experiment type: hbond
  - Sequence coverage of experimental data
    - Entity_assembly_ID: A, Chain length: 176, Sequence coverage: 36.9%
  - Total number of restraints: 50
  - Weight of restraints: 1.0 (50)
  - Potential type of restraints: square-well-parabolic (50)
  - Range of distance target values: 2.4, 2.4 (Å)
  - Distance restraints per residue
    - Chain_ID: A
    - Chain_ID: B
      None
  - Distance restraints on contact map

Dihedral angle restraints

Saveframe: CNS/XPLOR_dihedral_3
- Status: OK
- Experiment type: .
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 176, Sequence coverage: 75.0%
- Total number of restraints: 194
- Total number of restraints per polymer type: 194
- Weight of restraints: 1.0 (194)
- Potential type of restraints: square-well-parabolic (194)
- Plot of Phi-Psi angle restraints
- Dihedral angle restraints per residue
  - Chain_ID: A

Keywords cyclic nucleotide phosphodiesterase, PDE5, GAF domain, cGMP, NMR

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (1.462 seconds)

BMRB: 15734

Sample #1

Sample #2

Sample #3

Sample #4

Sample #5

Sample #6

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. mPDE5 GAFA, : 1 : 118 entities Detail

Interaction partners 1. mPDE5 GAFA, : 3 interactors Detail

Experiments performed 14 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

NMR combined restraints 5 contents Detail