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Pfu Rpp21 structure and assignments
Authors
Amero, C.D., Foster, M.P., Boomershine, W.P., Xu, Y.
Assembly
Rpp21-Zn
Entity
1. Rpp21 (polymer, Thiol state: all other bound), 123 monomers, 14882.90 Da Detail

MAKYNEKKEK KRIAKERIDI LFSLAERVFP YSPELAKRYV ELALLVQQKA KVKIPRKWKR RYCKKCHAFL VPGINARVRL RQKRMPHIVV KCLECGHIMR YPYIKEIKKR RKEKMEYGGL VPR


2. ZN (non-polymer, Thiol state: not present), 65.409 Da
Total weight
14948.31 Da
Max. entity weight
14882.9 Da
Entity Connection
na 4 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1nasing1:CYS63:SG2:ZN1:ZN
2nasing1:CYS66:SG2:ZN1:ZN
3nasing1:CYS92:SG2:ZN1:ZN
4nasing1:CYS95:SG2:ZN1:ZN

Source organism
Pyrococcus furiosus
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 71.5 %, Completeness: 59.6 %, Completeness (bb): 65.7 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All59.6 % (963 of 1615)55.8 % (486 of 871)63.5 % (395 of 622)67.2 % (82 of 122)
Backbone65.7 % (476 of 724)66.7 % (162 of 243)64.7 % (236 of 365)67.2 % (78 of 116)
Sidechain56.2 % (568 of 1010)51.6 % (324 of 628)63.8 % (240 of 376)66.7 % (4 of 6)
Aromatic63.6 % (70 of 110)63.6 % (35 of 55)63.0 % (34 of 54)100.0 % (1 of 1)
Methyl82.8 % (106 of 128)82.8 % (53 of 64)82.8 % (53 of 64)

1. Rpp21

MAKYNEKKEK KRIAKERIDI LFSLAERVFP YSPELAKRYV ELALLVQQKA KVKIPRKWKR RYCKKCHAFL VPGINARVRL RQKRMPHIVV KCLECGHIMR YPYIKEIKKR RKEKMEYGGL VPR

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 323 K, pH 6.7, Details Rpp21


#NameIsotope labelingTypeConcentration
1TRIS[U-99% 2H]10 mM
2potassium chloridenatural abundance10 mM
3sodium azidenatural abundance0.02 %
4Rpp21[U-100% 13C; U-100% 15N]1 mM
5ZINC chloridenatural abundance0.3 mM
6H2Onatural abundance90 %
7D2O10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 323 K, pH 6.7, Details Pfu Rpp21-Rpp29


#NameIsotope labelingTypeConcentration
8TRIS[U-99% 2H]10 mM
9potassium chloridenatural abundance10 mM
10sodium azidenatural abundance0.02 %
11Rpp21[U-100% 13C; U-100% 15N]0.5 mM
12ZINC chloridenatural abundance0.3 mM
13Rpp29natural abundance0.5 mM
14H2Onatural abundance90 %
15D2O10 %
Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 323 K, pH 6.7, Details Rpp21


#NameIsotope labelingTypeConcentration
16TRIS[U-99% 2H]10 mM
17potassium chloridenatural abundance10 mM
18sodium azidenatural abundance0.02 %
19Rpp21[U-100% 13C; U-100% 15N]1 mM
20ZINC chloridenatural abundance0.3 mM
21H2Onatural abundance90 %
22D2O10 %
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 323 K, pH 6.7, Details cobalt-substituted Rpp21


#NameIsotope labelingTypeConcentration
23TRIS[U-99% 2H]10 mM
24potassium chloridenatural abundance10 mM
25sodium azidenatural abundance0.02 %
26Rpp21[U-100% 13C; U-100% 15N]1 mM
27cobalt chloridenatural abundance0.3 mM
28H2Onatural abundance90 %
29D2O10 %

LACS Plot; CA
Referencing offset: -0.52 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.52 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.11 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.23 ppm, Outliers: 2 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2K3R, Strand ID: A Detail


Release date
2008-11-13
Citation
Solution structure of Pyrococcus furiosus RPP21, a component of the archaeal RNase P holoenzyme, and interactions with its RPP29 protein partner
Amero, C.D., Boomershine, W.P., Xu, Y., Foster, M.
Biochemistry (2008), 47, 11704-11710, PubMed 18922021 , DOI 10.1021/bi8015982 ,
Entries sharing articles Swiss-Prot: 2 entries Detail
  Swiss-Prot: Q8U0H6 released on 2004-07-05
    Title RNP4_PYRFU Entity Ribonuclease P protein component 4
  Swiss-Prot: Q8U007 released on 2004-03-29
    Title RNP1_PYRFU Entity Ribonuclease P protein component 1
Related entities 1. Rpp21, : 1 : 1 : 1 : 19 entities Detail
Experiments performed 22 experiments Detail
NMR combined restraints 4 contents Detail
Keywords NMR, RNase P, Rpp21, Pfu Rpp21