BMRBj - BMREntryMaster

Found 1 Document (0.867 seconds)

BMRB: 15783

2K43

acidic fibroblast growth factor solution structure in the FGF-1-C2A binary complex: key component in the fibroblast growthfactor non-classical pathway

Authors

Mohan, S.K., Yu, C.

Assembly

FGF-1

Entity

1. FGF-1 (polymer, Thiol state: all free), 133 monomers, 15095.85 Da Detail

YKKPKLLYCS NGGHFLRILP DGTVDGTRDR SDQHIQLQLS AESVGEVYIK STETGQYLAM DTDGLLYGSQ TPNEECLFLE RLEENHYNTY ISKKHAEKNW FVGLKKNGSC KRGPRTHYGQ KAILFLPLPV SSD

Formula weight

15095.85 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 71.7 %, Completeness (bb): 96.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	71.7 % (1127 of 1572)	73.6 % (606 of 823)	64.0 % (390 of 609)	93.6 % (131 of 140)
Backbone	96.3 % (757 of 786)	96.7 % (263 of 272)	95.3 % (369 of 387)	98.4 % (125 of 127)
Sidechain	52.8 % (479 of 907)	62.3 % (343 of 551)	37.9 % (130 of 343)	46.2 % (6 of 13)
Aromatic	4.4 % (6 of 136)	8.8 % (6 of 68)	0.0 % (0 of 67)	0.0 % (0 of 1)
Methyl	49.2 % (63 of 128)	76.6 % (49 of 64)	21.9 % (14 of 64)

1. FGF-1

YKKPKLLYCS NGGHFLRILP DGTVDGTRDR SDQHIQLQLS AESVGEVYIK STETGQYLAM DTDGLLYGSQ TPNEECLFLE RLEENHYNTY ISKKHAEKNW FVGLKKNGSC KRGPRTHYGQ KAILFLPLPV SSD

Show sample condition

Sample

Solvent system 90% H2O, 10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 25mM Phosphate buffer; 90%H20, 10% D20

#	Name	Isotope labeling	Concentration
1	FGF-1	natural abundance	1.0 mM
2	Phosphate buffer		25 mM
3	H2O	natural abundance	90 %
4	D2O		10 %

Protein Blocks Logo

Calculated from 20 models in PDB: 2K43, Strand ID: A Detail

Release date

2009-10-11

Citation

A residue-level investigation of the equilibrium unfolding of the C2A domain of synaptotagmin 1
Anbazhagan, V., Wang, H., Lu, C., Yu, C.
Arch. Biochem. Biophys. (2009), 490, 158-162, PubMed 19723500 , DOI 10.1016/j.abb.2009.08.018 , Abstract

Related entities 1. FGF-1, : 1 : 25 : 7 : 52 : 188 entities Detail

Interaction partners 1. FGF-1, : 9 interactors Detail

More details for 9 interactors identified by 8 citations

Experiments performed 1 experiments Detail

NMR combined restraints 6 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints	combined_15783_2k43.nef
Input source #2: Coordindates	2k43.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
YKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNW
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
YKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNW

-------110-------120-------130---
FVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD
|||||||||||||||||||||||||||||||||
FVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	133	0	0	100.0

Content subtype: combined_15783_2k43.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	chemical_shift_set	Warning	1094		100.0 (chain: A, length: 133)
1	Distance restraints	CNS/XPLOR_distance_constraints_2	Warning	1083 (1)	noe	100.0 (chain: A, length: 133)
2	Distance restraints	CNS/XPLOR_distance_constraints_4	Warning	412 (1)	noe	84.2 (chain: A, length: 133)
3	Distance restraints	CNS/XPLOR_distance_constraints_3	Warning	23 (1)	hbond	21.1 (chain: A, length: 133)
1	Dihedral angle restraints	CNS/XPLOR_dihedral_5	OK	201 (201)	.	91.0 (chain: A, length: 133)

Assigned chemical shifts

Saveframe: chemical_shift_set
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 133, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 598
  - ¹³C chemical shifts: 364
  - ¹⁵N chemical shifts: 132
- Completeness of assignments
  - Entity_assemble_ID: A
- Redox state of CYS
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	823	597	72.5
¹³C chemical shifts	609	364	59.8
¹⁵N chemical shifts	146	132	90.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	272	263	96.7
¹³C chemical shifts	266	259	97.4
¹⁵N chemical shifts	127	126	99.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	551	334	60.6
¹³C chemical shifts	343	105	30.6
¹⁵N chemical shifts	19	6	31.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	65	48	73.8
¹³C chemical shifts	65	4	6.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	68	4	5.9
¹³C chemical shifts	67	0	0.0
¹⁵N chemical shifts	1	0	0.0

Distance restraints

Saveframe: CNS/XPLOR_distance_constraints_2
- Status: Warning
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 133, Sequence coverage: 100.0%
- Total number of restraints: 1083
- Weight of restraints: 1.0 (1083)
- Potential type of restraints: square-well-parabolic (1083)
- Range of distance target values: 1.8, 5.47 (Å)
- Histogram of distance target values
- Histogram of discrepancy in distance target values
- Distance restraints per residue
  - Chain_ID: A
- Distance restraints on contact map
- Saveframe: CNS/XPLOR_distance_constraints_4
  - Status: Warning
  - Experiment type: noe
  - Sequence coverage of experimental data
    - Entity_assembly_ID: A, Chain length: 133, Sequence coverage: 84.2%
  - Total number of restraints: 412
  - Weight of restraints: 1.0 (412)
  - Potential type of restraints: square-well-parabolic (412)
  - Range of distance target values: 2.22, 5.39 (Å)
  - Histogram of distance target values
  - Distance restraints per residue
    - Chain_ID: A
  - Distance restraints on contact map
  - Saveframe: CNS/XPLOR_distance_constraints_3
    - Status: Warning
    - Experiment type: hbond
    - Sequence coverage of experimental data
      - Entity_assembly_ID: A, Chain length: 133, Sequence coverage: 21.1%
    - Total number of restraints: 23
    - Weight of restraints: 1.0 (23)
    - Potential type of restraints: square-well-parabolic (23)
    - Range of distance target values: 2.15, 2.15 (Å)
    - Distance restraints per residue
      - Chain_ID: A
    - Distance restraints on contact map

Dihedral angle restraints

Saveframe: CNS/XPLOR_dihedral_5
- Status: OK
- Experiment type: .
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 133, Sequence coverage: 91.0%
- Total number of restraints: 201
- Total number of restraints per polymer type: 201
- Weight of restraints: 1.0 (201)
- Potential type of restraints: square-well-parabolic (201)
- Plot of Phi-Psi angle restraints
- Dihedral angle restraints per residue
  - Chain_ID: A

Keywords beta barrel

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Found 1 Document (0.867 seconds)

BMRB: 15783

Sample

Related entities 1. FGF-1, : 1 : 25 : 7 : 52 : 188 entities Detail

Interaction partners 1. FGF-1, : 9 interactors Detail

Experiments performed 1 experiments Detail

Instrument

Sample

NMR combined restraints 6 contents Detail