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BMRB: 15839

2K5J

Solution structure of protein yiiF from Shigella flexneri serotype 5b (strain 8401) . Northeast Structural Genomics Consortium target sft1

Authors

Wu, Y., Singarapu, K., Semesi, A., Yee, A., Bansal, S., Prestegard, J., Arrowsmith, C., Szyperski, T.

Assembly

yiiF

Entity

1. yiiF (polymer, Thiol state: all free), 160 monomers, 18470.57 Da Detail

MNSLAGIDMG RILLDLSNEV IKQLDDLEVQ RNLPRADLLR EAVDQYLINQ SQTARTSVPG IWQGCEEDGV EYQRKLREEW MNSLAGIDMG RILLDLSNEV IKQLDDLEVQ RNLPRADLLR EAVDQYLINQ SQTARTSVPG IWQGCEEDGV EYQRKLREEW

Formula weight

18470.57 Da

Source organism

Escherichia coli

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 58.7 %, Completeness: 48.0 %, Completeness (bb): 45.9 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	48.0 % (904 of 1884)	52.5 % (520 of 990)	40.4 % (288 of 712)	52.7 % (96 of 182)
Backbone	45.9 % (437 of 952)	55.2 % (180 of 326)	36.6 % (172 of 470)	54.5 % (85 of 156)
Sidechain	50.1 % (542 of 1082)	51.2 % (340 of 664)	48.7 % (191 of 392)	42.3 % (11 of 26)
Aromatic	45.0 % (36 of 80)	50.0 % (20 of 40)	38.9 % (14 of 36)	50.0 % (2 of 4)
Methyl	54.2 % (104 of 192)	55.2 % (53 of 96)	53.1 % (51 of 96)

1. yiiF

MNSLAGIDMG RILLDLSNEV IKQLDDLEVQ RNLPRADLLR EAVDQYLINQ SQTARTSVPG IWQGCEEDGV EYQRKLREEW MNSLAGIDMG RILLDLSNEV IKQLDDLEVQ RNLPRADLLR EAVDQYLINQ SQTARTSVPG IWQGCEEDGV EYQRKLREEW

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	entity	[U-100% 13C; U-100% 15N]	0.8 mM
2	H2O	natural abundance	90 %
3	D2O	[U-100% 2H]	10 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
4	entity	[U-10% 13C; U-100% 15N]	0.8 mM
5	H2O	natural abundance	90 %
6	D2O	[U-100% 2H]	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.02 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.02 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.04 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2K5J, Strand ID: A, B Detail

Release date

2008-08-18

Citation

Solution structure of protein yiiF from Shigella flexneri serotype 5b (strain 8401) . Northeast Structural Genomics Consortium target sft1
Wu, Y., Singarapu, K., Semesi, A., Yee, A., Bansal, S., Prestegard, J., Arrowsmith, C., Szyperski, T.
Not known

Related entities 1. yiiF, : 1 entities Detail

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC