Search

gp16
Authors
Gallopin, M., Gilquin, B., Zinn-Justin, S.
Assembly
gp16
Entity
1. gp16 (polymer, Thiol state: not present), 109 monomers, 12600.95 Da Detail

MYEEFRDVIT FQSYVEQSNG EGGKTYKWVD EFTAAAHVQP ISQEEYYKAQ QLQTPIGYNI YTPYDDRIDK KMRVIYRGKI VTFIGDPVDL SGLQEITRIK GKEDGAYVG


Formula weight
12600.95 Da
Source organism
Bacillus phage SPP1
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.2 %, Completeness: 65.6 %, Completeness (bb): 92.1 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All65.6 % (857 of 1306)58.4 % (398 of 681)71.7 % (365 of 509)81.0 % (94 of 116)
Backbone92.1 % (595 of 646)89.3 % (200 of 224)95.3 % (302 of 317)88.6 % (93 of 105)
Sidechain47.0 % (357 of 759)43.3 % (198 of 457)54.3 % (158 of 291) 9.1 % (1 of 11)
Aromatic26.5 % (36 of 136)33.8 % (23 of 68)17.9 % (12 of 67)100.0 % (1 of 1)
Methyl65.7 % (71 of 108)63.0 % (34 of 54)68.5 % (37 of 54)

1. gp16

MYEEFRDVIT FQSYVEQSNG EGGKTYKWVD EFTAAAHVQP ISQEEYYKAQ QLQTPIGYNI YTPYDDRIDK KMRVIYRGKI VTFIGDPVDL SGLQEITRIK GKEDGAYVG

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5


#NameIsotope labelingTypeConcentration
1gp16natural abundance0.35 mM
2HEPESnatural abundance5 mM
3sodium chloridenatural abundance300 mM
4H2Onatural abundance90 %
5D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5


#NameIsotope labelingTypeConcentration
6gp16[U-100% 15N]0.35 mM
7HEPESnatural abundance5 mM
8sodium chloridenatural abundance300 mM
9H2Onatural abundance90 %
10D2Onatural abundance10 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5


#NameIsotope labelingTypeConcentration
11gp16[U-100% 13C; U-100% 15N]0.35 mM
12HEPESnatural abundance5 mM
13sodium chloridenatural abundance300 mM
14H2Onatural abundance90 %
15D2Onatural abundance10 %
Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5


#NameIsotope labelingTypeConcentration
16gp16[U-100% 13C; U-100% 15N; U-80% 2H]0.35 mM
17HEPESnatural abundance5 mM
18sodium chloridenatural abundance300 mM
19H2Onatural abundance90 %
20D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: 0.3 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: 0.3 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 5 Detail
LACS Plot; CO
Referencing offset: 0.74 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2KCA, Strand ID: A Detail


Release date
2009-05-19
Citation
Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating
Lhuillier, S., Gallopin, M., Gilquin, B., Brasiles, S., Lancelot, N., Letellier, G., Gilles, M., Dethan, G., Orlova, E.V., Couprie, J., Tavares, P., Zinn-Justin, S.
Proc. Natl. Acad. Sci. U. S. A. (2009), 106, 8507-8512, PubMed 19433794 , DOI 10.1073/pnas.0812407106 ,
Related entities 1. gp16, : 1 : 4 : 1 : 1 entities Detail
Experiments performed 17 experiments Detail
NMR combined restraints 3 contents Detail
Keywords beta-barrel