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Prp40 FF4 domain
Authors
Bonet, R., Ruiz, L., Morales, B., Macias, M.
Assembly
Prp40-FF4
Entity
1. Prp40-FF4 (polymer, Thiol state: not present), 69 monomers, 8202.186 Da Detail

GAMGNERRIL EQKKHYFWLL LQRTYTKTGK PKPSTWDLAS KELGESLEYK ALGDEDNIRR QIFEDFKPE


Formula weight
8202.186 Da
Source organism
Saccharomyces cerevisiae
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 84.1 %, Completeness (bb): 80.9 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All84.1 % (726 of 863)91.1 % (418 of 459)73.7 % (244 of 331)87.7 % (64 of 73)
Backbone80.9 % (330 of 408)96.4 % (135 of 140)65.3 % (132 of 202)95.5 % (63 of 66)
Sidechain87.1 % (452 of 519)86.8 % (277 of 319)90.2 % (174 of 193)14.3 % (1 of 7)
Aromatic78.0 % (64 of 82)95.1 % (39 of 41)64.1 % (25 of 39) 0.0 % (0 of 2)
Methyl93.1 % (54 of 58)93.1 % (27 of 29)93.1 % (27 of 29)

1. yeast Prp40 FF4 domain

GAMGNERRIL EQKKHYFWLL LQRTYTKTGK PKPSTWDLAS KELGESLEYK ALGDEDNIRR QIFEDFKPE

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1.0 atm, Temperature 285 K, pH 5.8


#NameIsotope labelingTypeConcentration
1yeast Prp40 FF4 domainnatural abundance0.5 mM
2sodium phosphatenatural abundance20 mM
3sodium chloridenatural abundance130 mM
4sodium azidenatural abundance0.5 mM
5H20natural abundance90 %
6D20natural abundance10 %
Sample #2

Solvent system 100% D2O, Pressure 1.0 atm, Temperature 285 K, pH 5.8


#NameIsotope labelingTypeConcentration
7yeast Prp40 FF4 domain[U-100% 15N]0.5 mM
8yeast Prp40 FF4 domain[U-100% 13C]0.5 mM
9sodium phosphatenatural abundance20 mM
10sodium chloridenatural abundance130 mM
11sodium azidenatural abundance0.5 mM
12D20natural abundance100 %

LACS Plot; CA
Referencing offset: -0.53 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.53 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.27 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 15 models in PDB: 2KFD, Strand ID: A Detail


Release date
2009-08-09
Citation
Solution structure of the fourth FF domain of yeast Prp40 splicing factor
Bonet, R., Ruiz, L., Morales, B., Macias, M.J.
Proteins (2009), 77, 1000-1003, PubMed 19722265 , DOI 10.1002/prot.22547 ,
Related entities 1. Prp40-FF4, : 1 : 4 entities Detail
Interaction partners 1. Prp40-FF4, : 44 interactors Detail
Experiments performed 10 experiments Detail
NMR combined restraints 3 contents Detail
Keywords FF domain, NMR spectroscopy, phospho-CTD, Prp40