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Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein.
Authors
Spadaccini, R., D'Errico, G., D'Alessio, V., Notomista, E., Bianchi, A., Merola, M., Picone, D.
Assembly
e1 peptide
Entity
1. e1 peptide (polymer, Thiol state: not present), 29 monomers, 3325.945 Da Detail

TGHRMAWDMM MNWSPTAALV VAQLLRIPQ


Formula weight
3325.945 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 95.5 %, Completeness (bb): 96.5 % Detail

Polymer type: polypeptide(L)

Total1H
All95.5 % (169 of 177)95.5 % (169 of 177)
Backbone96.5 % (55 of 57)96.5 % (55 of 57)
Sidechain95.0 % (114 of 120)95.0 % (114 of 120)
Aromatic85.7 % (12 of 14)85.7 % (12 of 14)
Methyl100.0 % (18 of 18)100.0 % (18 of 18)

1. e1 peptide

TGHRMAWDMM MNWSPTAALV VAQLLRIPQ

Sample #1

Solvent system 80% hexafluoroisopropanol/20%D2O, Pressure 1 atm, Temperature 300 K, pH 4.5


#NameIsotope labelingTypeConcentration
1e1natural abundance1 mM
2D2Onatural abundance20 %
3hexafluoroisopropanolnatural abundance80 %
Sample #2

Solvent system 80% hexafluoroisopropanol/20% H2O, Pressure 1 atm, Temperature 300 K, pH 4.5


#NameIsotope labelingTypeConcentration
4e1natural abundance1 mM
5H2Onatural abundance20 %
6hexafluoroisopropanolnatural abundance80 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2KNU, Strand ID: A Detail


Release date
2009-12-10
Citation
Structural characterization of the transmembrane proximal region of the hepatitis C virus E1 glycoprotein
Spadaccini, R., Notomista, G., Bianchi, V., Merola, E., Picone, A.
Biochim. Biophys. Acta (2010), 1798, 344-353, PubMed 19891955 , DOI 10.1016/j.bbamem.2009.10.018 ,
Related entities 1. e1 peptide, : 1 : 7 : 5 : 30 entities Detail
Interaction partners 1. e1 peptide, : 350 interactors Detail
Experiments performed 6 experiments Detail
NMR combined restraints 3 contents Detail
Keywords ESR, glycoprotein, HCV, NMR, pretransmembrane