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MAGI-1 PDZ1
Authors
Charbonier, S., Nomine, Y., Ramirez, J., Luck, K., Stote, R.H., Trave, G., Kieffer, B., Atkinson, R.A.
Assembly
MAGI-1 PDZ1
Entity
1. MAGI-1 PDZ1 (polymer, Thiol state: all free), 129 monomers, 13855.68 Da Detail

GAMGKPFFTR NPSELKGKFI HTKLRKSSRG FGFTVVGGDE PDEFLQIKSL VLDGPAALDG KMETGDVIVS VNDTCVLGHT HAQVVKIFQS IPIGASVDLE LCRGYPLPFD PDDPNTSLVT SVAILDKEP


Formula weight
13855.68 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts, spectral_density_values
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 95.8 %, Completeness (bb): 96.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All95.8 % (1400 of 1462)95.5 % (722 of 756)95.9 % (557 of 581)96.8 % (121 of 125)
Backbone96.3 % (726 of 754)96.2 % (251 of 261)96.3 % (360 of 374)96.6 % (115 of 119)
Sidechain95.8 % (789 of 824)95.2 % (471 of 495)96.6 % (312 of 323)100.0 % (6 of 6)
Aromatic96.0 % (96 of 100)96.0 % (48 of 50)96.0 % (48 of 50)
Methyl97.4 % (148 of 152)97.4 % (74 of 76)97.4 % (74 of 76)

1. MAGI-1 PDZ1

GAMGKPFFTR NPSELKGKFI HTKLRKSSRG FGFTVVGGDE PDEFLQIKSL VLDGPAALDG KMETGDVIVS VNDTCVLGHT HAQVVKIFQS IPIGASVDLE LCRGYPLPFD PDDPNTSLVT SVAILDKEP

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 295 K, pH 6.8


#NameIsotope labelingTypeConcentration
1MAGI-1 PDZ1natural abundance0.2 ~ 0.6 mM
2sodium phosphatenatural abundance0.02 ~ 0.1 mM
3sodium chloridenatural abundance50 mM
4DTTnatural abundance2 mM
5H2Onatural abundance90 %
6D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 295 K, pH 6.8


#NameIsotope labelingTypeConcentration
7MAGI-1 PDZ1[U-15N]0.2 ~ 0.6 mM
8sodium phosphatenatural abundance0.02 ~ 0.1 mM
9sodium chloridenatural abundance50 mM
10DTTnatural abundance2 mM
11H2Onatural abundance90 %
12D2Onatural abundance10 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 295 K, pH 6.8


#NameIsotope labelingTypeConcentration
13MAGI-1 PDZ1[U-100% 13C; U-100% 15N]0.2 ~ 0.6 mM
14sodium phosphatenatural abundance0.02 ~ 0.1 mM
15sodium chloridenatural abundance50 mM
16DTTnatural abundance2 mM
17H2Onatural abundance90 %
18D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.05 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.2 ppm, Outliers: 2 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2KPK, Strand ID: A Detail


Release date
2012-05-08
Citation 1
13C, 15N and 1H resonance assignment of the PDZ1 domain of MAGI-1 using QUASI
Charbonier, S., Coutouly, M., Kieffer, B., Trave, G., Atkinson, R.A.
J. Biomol. NMR (2006), 36 Suppl 1, 33-33, PubMed 16636753 , DOI 10.1007/s10858-006-0017-7 ,
Citation 2
The structural and dynamic response of MAGI-1 PDZ1 with noncanonical domain boundaries to the binding of human papillomavirus E6
Charbonier, S., Nomine, Y., Ramirez, J., Luck, K., Chapelle, A., Stote, R.H., Trave, G., Kieffer, B., Atkinson, R.A.
J. Mol. Biol. (2011), 406, 745-763, PubMed 21238461 , DOI 10.1016/j.jmb.2011.01.015 ,
Related entities 1. MAGI-1 PDZ1, : 1 : 1 : 4 : 57 entities Detail
Interaction partners 1. MAGI-1 PDZ1, : 24 interactors Detail
Experiments performed 15 experiments Detail
nullKeywords PDZ domain