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Found 1 Document (0.863 seconds)

BMRB: 16801

2KVZ

Structure of residues 160-235 of putative peptidoglycan binding protein lmo0835 from Listeria monocytogenes: target LmR64B of the Northeast Structural Genomics Consortium

Authors

Cort, J.R., Ramelot, T.A., Lee, D., Ciccosanti, C., Janjua, H., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Kennedy, M.A.

Assembly

lmo0835

Entity

1. lmo0835 (polymer, Thiol state: not present), 85 monomers, 9771.914 Da Detail

MDFGKPNQVT VNYLDENNTS IAPSLYLSGL FNEAYNVPMK KIKGYTLLKY DSEILGVFTE SPQTINIIYQ KKAPEQALEH HHHHH

Formula weight

9771.914 Da

Source organism

Listeria monocytogenes

Exptl. method

solution NMR

Refine. method

molecular dynamics, simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 91.8 %, Completeness: 80.8 %, Completeness (bb): 84.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	80.8 % (830 of 1027)	80.9 % (432 of 534)	79.9 % (321 of 402)	84.6 % (77 of 91)
Backbone	84.0 % (420 of 500)	82.2 % (139 of 169)	84.9 % (213 of 251)	85.0 % (68 of 80)
Sidechain	79.3 % (482 of 608)	80.3 % (293 of 365)	77.6 % (180 of 232)	81.8 % (9 of 11)
Aromatic	37.3 % (38 of 102)	35.3 % (18 of 51)	39.2 % (20 of 51)
Methyl	92.2 % (83 of 90)	93.3 % (42 of 45)	91.1 % (41 of 45)

1. lmo0835

MDFGKPNQVT VNYLDENNTS IAPSLYLSGL FNEAYNVPMK KIKGYTLLKY DSEILGVFTE SPQTINIIYQ KKAPEQALEH HHHHH

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
7	lmo0835	[5% 13C biosynthetically directed lableing, U-99% 15N]	0.92 mM
8	NaCl	natural abundance	100 mM
9	Sodium Acetate	natural abundance	20 mM
10	Calcium Chloride	natural abundance	5 mM
11	H2O	natural abundance	95 %
12	D2O	natural abundance	5 %

Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
13	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
14	NaCl	natural abundance	100 mM
15	Sodium Acetate	natural abundance	20 mM
16	Calcium Chloride	natural abundance	5 mM
17	D2O	natural abundance	100 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.06 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.06 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.01 ppm, Outliers: 3 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.89 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2KVZ, Strand ID: A Detail

Release date

2012-08-02

Citation

Chemical shift assignments for fragment 160-235 of putative peptidoglycan bound protein lmo0835 from Listeria monocytogenes: target LmR64B of the Northeast Structural Genomics Consortium
Cort, J.R.
Not known

Related entities 1. lmo0835, : 1 : 5 entities Detail

Experiments performed 12 experiments Detail

1 2D 1H-15N HSQC

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

2 2D 1H-13C HSQC

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

3 3D CBCA(CO)NH

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

4 3D HNCACB

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

5 3D HNCO

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

6 3D HBHA(CO)NH

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

7 3D HCCH-TOCSY

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

8 3D 1H-15N NOESY

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

9 3D 1H-13C NOESY

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

10 3D C(CO)NH

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
1	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
2	NaCl	natural abundance	100 mM
3	Sodium Acetate	natural abundance	20 mM
4	Calcium Chloride	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

11 4D HCCH HMQC-NOESY-HMQC

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
13	lmo0835	[U-99% 13C; U-99% 15N]	0.92 mM
14	NaCl	natural abundance	100 mM
15	Sodium Acetate	natural abundance	20 mM
16	Calcium Chloride	natural abundance	5 mM
17	D2O	natural abundance	100 %

12 2D 1H-13C HSQC

Instrument

Varian INOVA - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 4.5

#	Name	Isotope labeling	Concentration
7	lmo0835	[5% 13C biosynthetically directed lableing, U-99% 15N]	0.92 mM
8	NaCl	natural abundance	100 mM
9	Sodium Acetate	natural abundance	20 mM
10	Calcium Chloride	natural abundance	5 mM
11	H2O	natural abundance	95 %
12	D2O	natural abundance	5 %

nullKeywords LPXTG motif, peptidoglycan binding motif

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Found 1 Document (0.863 seconds)

BMRB: 16801

Sample #1

Sample #2

Sample #3

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. lmo0835, : 1 : 5 entities Detail

Experiments performed 12 experiments Detail

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