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Solution structure of dermcidin-1L, a human antibiotic peptide
Authors
Jung, H., Yang, S., Kim, J.
Assembly
dermcidin-1L
Entity
1. dermcidin-1L (polymer, Thiol state: not present), 48 monomers, 4818.436 Da Detail

SSLLEKGLDG AKKAVGGLGK LGKDAVEDLE SVGKGAVHDV KDVLDSVL


Formula weight
4818.436 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
DGSA-distance geometry simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.9 %, Completeness: 90.3 %, Completeness (bb): 96.7 % Detail

Polymer type: polypeptide(L)

Total1H15N
All90.3 % (279 of 309)88.9 % (232 of 261)97.9 % (47 of 48)
Backbone96.7 % (147 of 152)96.2 % (100 of 104)97.9 % (47 of 48)
Sidechain84.1 % (132 of 157)84.1 % (132 of 157)
Aromatic 0.0 % (0 of 2) 0.0 % (0 of 2)
Methyl94.1 % (32 of 34)94.1 % (32 of 34)

1. dermcidin-1L

SSLLEKGLDG AKKAVGGLGK LGKDAVEDLE SVGKGAVHDV KDVLDSVL

Sample

Solvent system trifluoroethanol/water, Pressure 1 atm, Temperature 298 K, pH 4.2


#NameIsotope labelingTypeConcentration
1TFE[U-99% 2H]50 %
2D2O[U-99% 2H]10 %
3H2Onatural abundance40 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2KSG, Strand ID: A Detail


Release date
2010-06-14
Citation
Analysis of the solution structure of the human antibiotic peptide dermcidin and its interaction with phospholipid vesicles
Jung, H., Yang, S., Sim, J., Lee, S., Lee, J., Kim, H., Shin, S., Kim, J.
BMB Rep. (2010), 43, 362-368, PubMed 20510021 , DOI: ,
Related entities 1. dermcidin-1L, : 1 : 5 : 2 entities Detail
Interaction partners 1. dermcidin-1L, : 34 interactors Detail
Experiments performed 4 experiments Detail
NMR combined restraints 4 contents Detail
Keywords antibiotic peptide