Search

DAXX helical bundle (DHB) domain
Authors
Escobar, E., McIntosh, L.P.
Assembly
DAXX helical bundle
Entity
1. DAXX helical bundle (polymer, Thiol state: all free), 94 monomers, 10930.67 Da Detail

GSHMGKKCYK LENEKLFEEF LELCKMQTAD HPEVVPFLYN RQQRAHSLFL ASAEFCNILS RVLSRARSRP AKLYVYINEL CTVLKAHSAK KKLN


Formula weight
10930.67 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts, heteronucl_NOEs, heteronucl_T1_relaxation, heteronucl_T2_relaxation, H_exch_rates
Chem. Shift Complete
Sequence coverage: 97.9 %, Completeness: 95.5 %, Completeness (bb): 96.2 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All95.5 % (1104 of 1156)96.5 % (587 of 608)93.8 % (421 of 449)97.0 % (96 of 99)
Backbone96.2 % (537 of 558)95.7 % (179 of 187)96.4 % (270 of 280)96.7 % (88 of 91)
Sidechain95.4 % (658 of 690)96.9 % (408 of 421)92.7 % (242 of 261)100.0 % (8 of 8)
Aromatic81.6 % (80 of 98)100.0 % (49 of 49)63.3 % (31 of 49)
Methyl99.0 % (99 of 100)98.0 % (49 of 50)100.0 % (50 of 50)

1. DAXX

GSHMGKKCYK LENEKLFEEF LELCKMQTAD HPEVVPFLYN RQQRAHSLFL ASAEFCNILS RVLSRARSRP AKLYVYINEL CTVLKAHSAK KKLN

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
1DAXX[U-100% 13C; U-100% 15N]1.2 mM
2potassium phosphatenatural abundance10 mM
3KClnatural abundance100 mM
4EDTAnatural abundance0.1 mM
5H2Onatural abundance95 %
6D2Onatural abundance5 %
Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
7DAXX[U-10% 13C]0.8 mM
8potassium phosphatenatural abundance10 mM
9KClnatural abundance100 mM
10EDTAnatural abundance0.1 mM
11H2Onatural abundance95 %
12D2Onatural abundance5 %

LACS Plot; CA
Referencing offset: -0.23 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.23 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.02 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.08 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 25 models in PDB: 2KZS, Strand ID: A Detail


Heteronucl. T1
83 T1 values in 1 lists
Coherence Sz, Field strength (1H) 500 MHz, Pressure 1 atm, Temperature 298 K, pH 6.5 Detail
Heteronucl. T2
83 T2 values in 1 lists
Coherence S(+,-), Field strength (1H) 500 MHz, Pressure 1 atm, Temperature 298 K, pH 6.5 Detail
Heteronucl. NOE
83 NOE values in 1 lists
Value type peak height, Field strength (1H) 500 MHz, Pressure 1 atm, Temperature 298 K, pH 6.5 Detail
Heteronucl. T1/T2
83 T1/T2 values in 1 lists
Field strength (1H) 500 MHz, Pressure 1 atm, Temperature 298 K, pH 6.5 Detail
1H exchange rate
25 kex values in 1 lists
Pressure 1 atm, Temperature 298 K, pH 6.5 Detail
Release date
2011-03-06
Citation
Structural characterization of the DAXX N-terminal helical bundle domain and its complex with Rassf1C
Escobar-Cabrera, E., Lau, D.K.W., Giovinazzi, S.R., Alexander, I.M., McIntosh, L.P.
Structure (2010), 18, 1642-1653, PubMed 21134643 , DOI 10.1016/j.str.2010.09.016 ,
Entries sharing articles BMRB: 1, Swiss-Prot: 2 entries Detail
  BMRB: 17019 released on 2011-03-06
    Title DAXX helical bundle (DHB) domain / Rassf1C complex
  Swiss-Prot: Q9NS23 released on 2004-07-19
    Title RASF1_HUMAN Entity Ras association domain-containing protein 1
  Swiss-Prot: Q9UER7 released on 2002-11-01
    Title DAXX_HUMAN Entity Death domain-associated protein 6
Related entities 1. DAXX helical bundle, : 1 : 1 : 5 : 8 entities Detail
Interaction partners 1. DAXX helical bundle, : 79 interactors Detail
Experiments performed 20 experiments Detail
nullKeywords DAXX, Helix bundle, DAXX helical bundle (DHB) domain