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Solution structure of P2a-J2a/b-P2b of human telomerase RNA
Authors
Zhang, Q., Kim, N., Peterson, R.D., Wang, Z., Feigon, J.
Assembly
35-MER
Entity
1. 35-MER (polymer, Thiol state: not present), 35 monomers, 11227.61 Da Detail

GGCUUUUGCU CCCCGUGCUU CGGCACGGAA AAGCC


Formula weight
11227.61 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 97.7 %, Completeness (bb): 100.0 % Detail

Polymer type: polyribonucleotide

Total1H13C15N
All97.7 % (552 of 565)96.8 % (302 of 312)100.0 % (235 of 235)83.3 % (15 of 18)
Suger, PO4100.0 % (385 of 385)100.0 % (210 of 210)100.0 % (175 of 175)
Nucleobase92.8 % (167 of 180)90.2 % (92 of 102)100.0 % (60 of 60)83.3 % (15 of 18)
Aromatic95.5 % (149 of 156)94.9 % (74 of 78)100.0 % (60 of 60)83.3 % (15 of 18)

1. RNA 35-MER

GGCUUUUGCU CCCCGUGCUU CGGCACGGAA AAGCC

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
1RNA_35-MERnatural abundance1.0 mM
2H2Onatural abundance90 %
3D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
4P2ab RNA (35-MER)[U-98% 13C; U-98% 15N]1.0 mM
5H2Onatural abundance90 %
6D2Onatural abundance10 %
Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
7P2ab RNA (35-MER)[U-13C; U-15N]-Ade1.0 mM
8D2Onatural abundance100 %
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
9P2ab RNA (35-MER)[U-13C; U-15N]-Cyt1.0 mM
10D2Onatural abundance100 %
Sample #5

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
11P2ab RNA (35-MER)[U-13C; U-15N]-Gua1.0 mM
12D2Onatural abundance100 %
Sample #6

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
13P2ab RNA (35-MER)[U-13C; U-15N]-Ura1.0 mM
14D2Onatural abundance100 %
Sample #7

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
15P2ab RNA (35-MER)natural abundance1.0 mM
16D2Onatural abundance100 %
Sample #8

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.4


#NameIsotope labelingTypeConcentration
17P2ab RNA (35-MER)[U-98% 13C; U-98% 15N]1.0 mM
18D2Onatural abundance100 %

Release date
2010-10-25
Citation
Structurally conserved five nucleotide bulge determines the overall topology of the core domain of human telomerase RNA
Zhang, Q., Kim, N., Peterson, R.D., Wang, Z., Feigon, J.
Proc. Natl. Acad. Sci. U. S. A. (2010), 107, 18761-18768, PubMed 20966348 , DOI 10.1073/pnas.1013269107 ,
Related entities 1. 35-MER, : 1 entities Detail
Experiments performed 40 experiments Detail
NMR combined restraints 6 contents Detail
Keywords hTR, human telomerase RNA, J2ab, P2a, P2b