BMRBj - BMREntryMaster

	Total	¹H
All	100.0 % (77 of 77)	100.0 % (77 of 77)
Backbone	100.0 % (22 of 22)	100.0 % (22 of 22)
Sidechain	100.0 % (55 of 55)	100.0 % (55 of 55)
Aromatic	100.0 % (2 of 2)	100.0 % (2 of 2)
Methyl	100.0 % (8 of 8)	100.0 % (8 of 8)

1. stapled peptide SP6

XEKHKILXRL LXDSX

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 5.5

#	Name	Isotope labeling	Concentration
1	stapled peptide SP6	natural abundance	5 (±1.0) mM
2	H2O	natural abundance	90 %
3	D2O	natural abundance	10 %
4	phosphate buffer	natural abundance	50 mM

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 5.5

#	Name	Isotope labeling	Concentration
5	stapled peptide SP6	natural abundance	5 (±1.0) mM
6	D2O	natural abundance	100 %
7	phosphate buffer	natural abundance	50 mM

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Calculated from 10 models in PDB: 2LDD, Strand ID: A Detail

Release date

2011-10-25

Citation

Design and structure of stapled peptides binding to estrogen receptors
Phillips, C., Roberts, L.R., Schade, M., Bazin, R., Bent, A., Davies, N.L., Moore, R., Pannifer, A.D., Pickford, A.R., Prior, S.H., Read, C.M., Scott, A., Brown, D.G., Xu, B., Irving, S.L.
J. Am. Chem. Soc. (2011), 133, 9696-9699, PubMed 21612236 , DOI 10.1021/ja202946k , Abstract

Entries sharing articles BMRB: 2 entries Detail

  BMRB: 17657 released on 2011-10-25
    Title Solution structure of the estrogen receptor-binding stapled peptide SP2 (Ac-HKXLHQXLQDS-NH2)
  BMRB: 17658 released on 2011-10-25
    Title Solution structure of the estrogen receptor-binding stapled peptide SP1 (Ac-HXILHXLLQDS-NH2)

Related entities 1. stapled peptide SP6, : 1 : 47 entities Detail

Experiments performed 6 experiments Detail

NMR combined restraints 3 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints	combined_17659_2ldd.nef
Input source #2: Coordindates	2ldd.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	True (see coodinates for details)
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:1:ACE:C	1:2:GLU:N	unknown	unknown	n/a
1:7:LEU:C	1:8:MK8:N	unknown	unknown	n/a
1:8:MK8:C	1:9:ARG:N	unknown	unknown	n/a
1:11:LEU:C	1:12:MK8:N	unknown	unknown	n/a
1:12:MK8:C	1:13:ASP:N	unknown	unknown	n/a
1:14:SER:C	1:15:NH2:N	unknown	unknown	n/a
1:8:MK8:CE	1:12:MK8:CE	unknown	unknown	n/a

Non-standard residues

Chain_ID	Seq_ID	Comp_ID	Chem_comp_name	Experimental evidences
A	0	ACE	ACETYL GROUP	Assigned chemical shifts, Distance restraints, Coordinates
A	7	MK8	2-methyl-L-norleucine	Assigned chemical shifts, Distance restraints, Coordinates
A	11	MK8	2-methyl-L-norleucine	Assigned chemical shifts, Distance restraints, Coordinates
A	14	NH2	AMINO GROUP	Assigned chemical shifts, Coordinates

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

0--------10----
XEKHKILXRLLXDSX
|||||||||||||||
XEKHKILXRLLXDSX
--------10-----

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	15	0	0	100.0

Content subtype: combined_17659_2ldd.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Covalent bonds	assembly	OK	7		No information
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	96		100.0 (chain: A, length: 15)
1	Distance restraints	CNS/XPLOR_distance_constraints_2	OK	493 (1)	noe	93.3 (chain: A, length: 15)

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 15, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 96
- Completeness of assignments
  - Entity_assemble_ID: A
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
8	ARG	HH11	6.78295
8	ARG	HH21	6.78295

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	99	99	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	23	23	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	76	76	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	13	13	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	2	2	100.0

Covalent bonds

Saveframe: assembly
- Status: OK

Distance restraints

Saveframe: CNS/XPLOR_distance_constraints_2
- Status: OK
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 15, Sequence coverage: 93.3%
- Total number of restraints: 493
- Weight of restraints: 1.0 (493)
- Potential type of restraints: square-well-parabolic (493)
- Range of distance target values: 1.83, 3.4 (Å)
- Histogram of distance target values
- Distance restraints per residue
  - Chain_ID: A
- Distance restraints on contact map

Keywords Estrogen receptor ligand, Stapled peptide

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Found 1 Document (0.657 seconds)

BMRB: 17659

Sample #1

Sample #2

Entries sharing articles BMRB: 2 entries Detail

Related entities 1. stapled peptide SP6, : 1 : 47 entities Detail

Experiments performed 6 experiments Detail

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NMR combined restraints 3 contents Detail