BMRBj - BMREntryMaster

Found 1 Document (0.777 seconds)

BMRB: 17737

2LF3

Solution NMR structure of HopPmal_281_385 from Pseudomonas syringae pv. maculicola str. ES4326, Midwest Center for Structural Genomics target APC40104.5 and Northeast Structural Genomics Consortium target PsT2A

Authors

Wu, B., Yee, A., Houliston, S., Semesi, A., Garcia, M., Singer, A.U., Savchenko, A., Arrowsmith, C.H.

Assembly

HopPmal 281 385

Entity

1. HopPmal 281 385 (polymer, Thiol state: not present), 105 monomers, 11569.05 Da Detail

SQRPVDRNPP RINLMPTGAN RVAMRNRGNN EADAALQALA QNGINMEDLR AALEAYIVWL RPIPLDIANA LEGVGITPRF DNPEEAKVDN PLMNLSSALK RRLDA

Formula weight

11569.05 Da

Source organism

Pseudomonas syringae pv. maculicola str. ES4326

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.0 %, Completeness: 95.1 %, Completeness (bb): 96.7 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	95.1 % (1134 of 1193)	94.4 % (593 of 628)	95.6 % (433 of 453)	96.4 % (108 of 112)
Backbone	96.7 % (592 of 612)	96.1 % (198 of 206)	96.8 % (300 of 310)	97.9 % (94 of 96)
Sidechain	94.1 % (641 of 681)	93.6 % (395 of 422)	95.5 % (232 of 243)	87.5 % (14 of 16)
Aromatic	80.0 % (24 of 30)	93.3 % (14 of 15)	64.3 % (9 of 14)	100.0 % (1 of 1)
Methyl	100.0 % (126 of 126)	100.0 % (63 of 63)	100.0 % (63 of 63)

1. entity

SQRPVDRNPP RINLMPTGAN RVAMRNRGNN EADAALQALA QNGINMEDLR AALEAYIVWL RPIPLDIANA LEGVGITPRF DNPEEAKVDN PLMNLSSALK RRLDA

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	HopPmal_281_385	[U-100% 13C; U-100% 15N]	0.3 mM
2	TRIS	[U-100% 2H]	10 mM
3	sodium chloride	natural abundance	300 mM
4	zinc sulphate	natural abundance	10 uM
5	DTT	[U-100% 2H]	10 mM
6	NaN3	natural abundance	0.01 %
7	benzamidine	natural abundance	10 mM
8	inhibitor cocktail	natural abundance	1 na
9	H2O	natural abundance	90 %
10	D2O	natural abundance	10 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
11	HopPmal_281_385	[U-100% 13C; U-100% 15N]	1 mM
12	TRIS	[U-100% 2H]	10 mM
13	sodium chloride	natural abundance	300 mM
14	zinc sulphate	natural abundance	10 uM
15	DTT	[U-100% 2H]	10 mM
16	NaN3	natural abundance	0.01 %
17	benzamidine	natural abundance	10 mM
18	inhibitor cocktail	natural abundance	1 na
19	H2O	natural abundance	90 %
20	D2O	natural abundance	10 %

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
21	HopPmal_281_385	[U-7% 13C; U-100% 15N]	0.2 mM
22	TRIS	[U-100% 2H]	10 mM
23	sodium chloride	natural abundance	300 mM
24	zinc sulphate	natural abundance	10 uM
25	DTT	[U-100% 2H]	10 mM
26	NaN3	natural abundance	0.01 %
27	benzamidine	natural abundance	10 mM
28	inhibitor cocktail	natural abundance	1 na
29	H2O	natural abundance	90 %
30	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.03 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.03 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.12 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.12 ppm, Outliers: 5 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2LF3, Strand ID: A Detail

Release date

2011-07-17

Citation

Structural analysis of HopPmaL reveals the presence of a second adaptor domain common to the HopAB family of Pseudomonas syringae type III effectors
Singer, A.U., Wu, B., Yee, A., Houliston, S., Xu, X., Cui, H., Skarina, T., Garcia, M., Semesi, A., Arrowsmith, C.H., Savchenko, A.
Biochemistry (2012), 51, 1-3, PubMed 22191472 , DOI 10.1021/bi2013883 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 17739 released on 2011-07-17
Title Solution NMR structure of HopABPph1448_220_320 from Pseudomonas syringae pv. phaseolicola str. 1448A, Midwest Center for Structural Genomics target APC40132.4 and Northeast Structural Genomics Consortium target PsT3A

Related entities 1. HopPmal 281 385, : 1 : 1 : 9 entities Detail

Experiments performed 13 experiments Detail

1 3D HNCO