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BMRB: 17739

2LF6

Solution NMR structure of HopABPph1448_220_320 from Pseudomonas syringae pv. phaseolicola str. 1448A, Midwest Center for Structural Genomics target APC40132.4 and Northeast Structural Genomics Consortium target PsT3A

Authors

Wu, B., Yee, A., Houliston, S., Semesi, A., Garcia, M., Singer, A.U., Savchenko, A., Arrowsmith, C.H.

Assembly

HopAB1Pph1448 220 320

Entity

1. HopAB1Pph1448 220 320 (polymer, Thiol state: not present), 101 monomers, 11261.59 Da Detail

QGLDLESARL ASAARHNHSA NQTNEALRRL TQEGVDMERL RTSLGRYIMS LEPLPPDLRR ALESVGINPF IPEELSLVDH PVLNFSAALN RMLASRQTTT N

Formula weight

11261.59 Da

Source organism

Pseudomonas savastanoi pv. phaseolicola 1448A

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 93.1 %, Completeness: 87.7 %, Completeness (bb): 87.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	87.7 % (1006 of 1147)	88.3 % (529 of 599)	87.3 % (386 of 442)	85.8 % (91 of 106)
Backbone	87.0 % (517 of 594)	87.5 % (175 of 200)	87.0 % (260 of 299)	86.3 % (82 of 95)
Sidechain	87.5 % (569 of 650)	87.2 % (348 of 399)	88.3 % (212 of 240)	81.8 % (9 of 11)
Aromatic	65.0 % (26 of 40)	80.0 % (16 of 20)	50.0 % (10 of 20)
Methyl	99.2 % (123 of 124)	100.0 % (62 of 62)	98.4 % (61 of 62)

1. HopAB1Pph1448 220 320

QGLDLESARL ASAARHNHSA NQTNEALRRL TQEGVDMERL RTSLGRYIMS LEPLPPDLRR ALESVGINPF IPEELSLVDH PVLNFSAALN RMLASRQTTT N

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	HopAB1Pph1448_220_320	[U-100% 13C; U-100% 15N]	1 mM
2	TRIS	[U-100% 2H]	10 mM
3	sodium chloride	natural abundance	300 mM
4	zinc sulphate	natural abundance	10 uM
5	DTT	[U-100% 2H]	10 mM
6	NaN3	natural abundance	0.01 %
7	benzamidine	natural abundance	10 mM
8	inhibitor cocktail	natural abundance	1 na
9	H2O	natural abundance	90 %
10	D2O	natural abundance	10 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
11	HopAB1Pph1448_220_320	[U-7% 13C; U-100% 15N]	0.2 mM
12	TRIS	[U-100% 2H]	10 mM
13	sodium chloride	natural abundance	300 mM
14	zinc sulphate	natural abundance	10 uM
15	DTT	[U-100% 2H]	10 mM
16	NaN3	natural abundance	0.01 %
17	benzamidine	natural abundance	10 mM
18	inhibitor cocktail	natural abundance	1 na
19	H2O	natural abundance	90 %
20	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.13 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.13 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.16 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.44 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2LF6, Strand ID: A Detail

Release date

2011-07-17

Citation

Structural analysis of HopPmaL reveals the presence of a second adaptor domain common to the HopAB family of Pseudomonas syringae type III effectors
Singer, A.U., Wu, B., Yee, A., Houliston, S., Xu, X., Cui, H., Skarina, T., Garcia, M., Semesi, A., Arrowsmith, C.H., Savchenko, A.
Biochemistry (2012), 51, 1-3, PubMed 22191472 , DOI 10.1021/bi2013883 , Abstract

Related entities 1. HopAB1Pph1448 220 320, : 1 : 2 : 4 entities Detail

Interaction partners 1. HopAB1Pph1448 220 320, : 1 interactors Detail

More details for 1 interactors identified by 1 citations

Experiments performed 10 experiments Detail

1 3D HNCO