THE HIGH RESOLUTION STRUCTURE OF UBIQUITIN LIKE DOMAIN OF UBLCP1
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 89.0 % (866 of 973) | 89.4 % (457 of 511) | 87.6 % (332 of 379) | 92.8 % (77 of 83) |
Backbone | 96.7 % (462 of 478) | 97.6 % (161 of 165) | 95.3 % (225 of 236) | 98.7 % (76 of 77) |
Sidechain | 83.8 % (477 of 569) | 85.5 % (296 of 346) | 82.9 % (180 of 217) | 16.7 % (1 of 6) |
Aromatic | 26.7 % (8 of 30) | 46.7 % (7 of 15) | 0.0 % (0 of 14) | 100.0 % (1 of 1) |
Methyl | 94.4 % (102 of 108) | 94.4 % (51 of 54) | 94.4 % (51 of 54) |
1. UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1
MALPIIVKWG GQEYSVTTLS EDDTVLDLKQ FLKTLTGVLP ERQKLLGLKV KGKPAENDVK LGALKLKPNT KIMMMGTREE SSolvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 MM [U-99% 15N] UBLDOMAIN OF UBLCP1-1, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-99% 15N] | 1.5 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 [U-95% 13C
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C] | 1.5 mM | |
5 | D2O | natural abundance | 100 % |
Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 MM [U-99% 15N] UBLDOMAIN OF UBLCP1-1, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-99% 15N] | 1.5 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details U-99% 15N/95% 13C] UBLDOMAI OF UBLCP1-2, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C; U-95% 15N] | 1.5 mM | |
7 | H2O | natural abundance | 90 % | |
8 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 [U-95% 13C
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C] | 1.5 mM | |
5 | D2O | natural abundance | 100 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 MM [U-99% 15N] UBLDOMAIN OF UBLCP1-1, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-99% 15N] | 1.5 mM | |
2 | H2O | natural abundance | 90 % | |
3 | D2O | natural abundance | 10 % |
Bruker DRX - 900 MHz
State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.5 [U-95% 13C
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | [U-95% 13C] | 1.5 mM | |
5 | D2O | natural abundance | 100 % |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_17805_2lgd.nef |
Input source #2: Coordindates | 2lgd.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
-0--------10--------20--------30--------40--------50--------60--------70--------80- GSMALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GSMALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES --------10--------20--------30--------40--------50--------60--------70--------80---
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 83 | 0 | 0 | 100.0 |
Content subtype: combined_17805_2lgd.nef
Assigned chemical shifts
-0--------10--------20--------30--------40--------50--------60--------70--------80- GSMALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ..MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREE -0--------10--------20--------30--------40--------50--------60--------70--------80
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 518 | 463 | 89.4 |
13C chemical shifts | 384 | 329 | 85.7 |
15N chemical shifts | 87 | 77 | 88.5 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 170 | 163 | 95.9 |
13C chemical shifts | 166 | 151 | 91.0 |
15N chemical shifts | 79 | 76 | 96.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 348 | 300 | 86.2 |
13C chemical shifts | 218 | 178 | 81.7 |
15N chemical shifts | 8 | 1 | 12.5 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 58 | 51 | 87.9 |
13C chemical shifts | 58 | 51 | 87.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 15 | 7 | 46.7 |
13C chemical shifts | 14 | 0 | 0.0 |
15N chemical shifts | 1 | 1 | 100.0 |
Distance restraints
-0--------10--------20--------30--------40--------50--------60--------70--------80- GSMALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ..MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL.LKVKGKPAENDVKLGALKLKPNTKIMMMGTREE -0--------10--------20--------30--------40--------50--------60--------70--------80
Dihedral angle restraints
-0--------10--------20--------30--------40--------50--------60--------70--------80- GSMALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES |||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ..MALPIIVKWGGQEYSV..LSED.TVLDLKQFLKTLTGVLPERQKLL.LKVKGKP...DVKLGALKLKPNTKIMMMGTRE -0--------10--------20--------30--------40--------50--------60--------70---------