Atomic Resolution Protein Structures using NMR Chemical Shift Tensors
Polymer type: polypeptide(L)
Total | 13C | 15N | |
---|---|---|---|
All | 100.0 % (310 of 310) | 100.0 % (248 of 248) | 100.0 % (62 of 62) |
Backbone | 100.0 % (220 of 220) | 100.0 % (164 of 164) | 100.0 % (56 of 56) |
Sidechain | 100.0 % (142 of 142) | 100.0 % (136 of 136) | 100.0 % (6 of 6) |
Aromatic | 100.0 % (28 of 28) | 100.0 % (27 of 27) | 100.0 % (1 of 1) |
Methyl | 100.0 % (32 of 32) | 100.0 % (32 of 32) |
1. entity
MQYKLILNGK TLKGETTTEA VDAATAEKVF KQYANDNGVD GEWTYDDATK TFTVTESolvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.0 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | nitrogen | 0.0 ppm | na | indirect | 1.0 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.0 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | nitrogen | 0.0 ppm | na | indirect | 1.0 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.0 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | nitrogen | 0.0 ppm | na | indirect | 1.0 |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Varian Infinity Plus - 500 MHz
State solid, Solvent system solid, Pressure 1 atm, Temperature 273 K, pH 5.5, Details 20 mg [U-2-13C-glycerol; U-100% 15N] GB1, (4R)-2-Metylpentane-2,4-Diol (50% v/v), Isopropyl alcohol (25% v/v), 25 mg/mL GB1 in 50 mM sodium phosphate buffered H2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | GB1 | [U-2-13C-glycerol; U-100% 15N] | 20 mg | |
2 | (4R)-2-Metylpentane-2,4-Diol | natural abundance | 50 % | |
3 | Isopropyl alcohol | natural abundance | 25 % | |
4 | GB1 | natural abundance | 25 mg/mL | |
5 | sodium phosphate buffered H2O | natural abundance | 50 mM |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_17810_2lgi.nef |
Input source #2: Coordindates | 2lgi.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 56 | 0 | 0 | 100.0 |
Content subtype: combined_17810_2lgi.nef
Assigned chemical shifts
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
Comp_index_ID | Comp_ID | Atom_ID | CS value (ppm) |
---|---|---|---|
2 | GLN | CD | 180.44 |
3 | TYR | CG | 128.52 |
3 | TYR | CZ | 158.33 |
4 | LYS | NZ | 33.14 |
8 | ASN | CG | 176.55 |
10 | LYS | NZ | 33.13 |
13 | LYS | NZ | 31.33 |
15 | GLU | CD | 181.88 |
19 | GLU | CD | 182.18 |
22 | ASP | CG | 179.88 |
27 | GLU | CD | 181.73 |
28 | LYS | NZ | 32.57 |
30 | PHE | CG | 138.38 |
31 | LYS | NZ | 32.2 |
32 | GLN | CD | 180.04 |
33 | TYR | CG | 129.82 |
33 | TYR | CZ | 159.36 |
35 | ASN | CG | 176.11 |
36 | ASP | CG | 177.8 |
37 | ASN | CG | 176.88 |
40 | ASP | CG | 180.73 |
42 | GLU | CD | 181.82 |
43 | TRP | CD2 | 129.71 |
43 | TRP | CE2 | 138.49 |
43 | TRP | CG | 111.78 |
45 | TYR | CG | 127.79 |
45 | TYR | CZ | 157.53 |
46 | ASP | CG | 180.17 |
47 | ASP | CG | 179.84 |
50 | LYS | NZ | 33.86 |
52 | PHE | CG | 140.02 |
56 | GLU | CD | 183.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 248 | 248 | 100.0 |
15N chemical shifts | 62 | 62 | 100.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 112 | 112 | 100.0 |
15N chemical shifts | 56 | 56 | 100.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 136 | 136 | 100.0 |
15N chemical shifts | 6 | 6 | 100.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 33 | 33 | 100.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 27 | 27 | 100.0 |
15N chemical shifts | 1 | 1 | 100.0 |
Distance restraints
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDA.TAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| .QYKLILNGKTLKGET.TEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
Dihedral angle restraints
--------10--------20--------30--------40--------50------ MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE