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NOE-based 3D structure of the monomeric intermediate of CylR2 at 262K (-11 Celsius degrees)
Authors
Jaremko, M., Jaremko, L., Kim, H., Cho, M., Schwieters, C.D., Giller, K., Becker, S., Zweckstetter, M.
Assembly
CylR2
Entity
1. CylR2 (polymer, Thiol state: not present), 66 monomers, 7715.914 Da Detail

MIINNLKLIR EKKKISQSEL AALLEVSRQT INGIEKNKYN PSLQLALKIA YYLNTPLEDI FQWQPE


Formula weight
7715.914 Da
Exptl. method
solution NMR
Refine. method
SIMULATED ANNEALING
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 68.5 %, Completeness (bb): 67.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All68.5 % (576 of 841)72.1 % (321 of 445)57.9 % (186 of 321)92.0 % (69 of 75)
Backbone67.4 % (263 of 390)84.6 % (110 of 130)47.7 % (94 of 197)93.7 % (59 of 63)
Sidechain68.0 % (351 of 516)67.0 % (211 of 315)68.8 % (130 of 189)83.3 % (10 of 12)
Aromatic43.5 % (20 of 46)43.5 % (10 of 23)45.5 % (10 of 22) 0.0 % (0 of 1)
Methyl100.0 % (88 of 88)100.0 % (44 of 44)100.0 % (44 of 44)

1. CylR2

MIINNLKLIR EKKKISQSEL AALLEVSRQT INGIEKNKYN PSLQLALKIA YYLNTPLEDI FQWQPE

Sample

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 262 K, pH 7.0, Details sample was in 10 capillaries ca. 25-30 uL, each inserted into the regular NMR tube


#NameIsotope labelingTypeConcentration
1CylR2[U-100% 13C; U-100% 15N]0.52 mM
2sodium chloridenatural abundance600 mM
3HEPESnatural abundance50 mM
4H2Onatural abundance93 %
5D2Onatural abundance7 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2LYQ, Strand ID: A Detail


Release date
2013-02-14
Citation
Cold denaturation of a protein dimer monitored at atomic resolution
Jaremko, M., Jaremko, L., Kim, H., Cho, M., Schwieters, C.D., Giller, K., Becker, S., Zweckstetter, M.
Nat. Chem. Biol. (2013), 9, 264-270, PubMed 23396077 , DOI 10.1038/nchembio.1181 ,
Related entities 1. CylR2, : 1 : 9 : 2 : 58 entities Detail
Experiments performed 6 experiments Detail
nullKeywords cold denaturation, CylR2, cytolysin repressor 2, DNA-binding protein, helix-turn-helix, NOE-based structure, protein folding