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Solution structure and binding studies of the RanBP2-type zinc finger of RBM5
Authors
Farina, B., Pellecchia, M.
Assembly
RBM5-ZF1
Entity
1. RBM5-ZF1 (polymer, Thiol state: not present), 32 monomers, 3726.383 Da Detail

XKFEDWLCNK CCLNNFRKRL KCFRCGADKF DX


2. AQN (non-polymer), 288.275 Da
3. ZN (non-polymer), 65.409 Da
Total weight
4080.067 Da
Max. entity weight
3726.383 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing, Energy minimization
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 93.8 %, Completeness: 97.1 %, Completeness (bb): 100.0 % Detail

Polymer type: polypeptide(L)

Total1H
All97.1 % (200 of 206)97.1 % (200 of 206)
Backbone100.0 % (61 of 61)100.0 % (61 of 61)
Sidechain95.9 % (139 of 145)95.9 % (139 of 145)
Aromatic84.6 % (22 of 26)84.6 % (22 of 26)
Methyl100.0 % (7 of 7)100.0 % (7 of 7)

1. RBM5-ZF1

XKFEDWLCNK CCLNNFRKRL KCFRCGADKF DX

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293 K, pH 5.7


#NameIsotope labelingTypeConcentration
1RBM5-ZF1natural abundance100 uM
2ZINC IONnatural abundance150 uM
3AQNnatural abundance500 uM
4H2Onatural abundance90 %
5D2Onatural abundance10 %

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Calculated from 20 models in PDB: 2LK1, Strand ID: A Detail


Release date
2012-01-04
Citation
Targeting zinc finger domains with small molecules: solution structure and binding studies of the RanBP2-type zinc finger of RBM5
Farina, B., Fattorusso, R., Pellecchia, M.
Chembiochem. (2011), 12, 2837-2845, PubMed 22162216 , DOI 10.1002/cbic.201100582 ,
Related entities 1. RBM5-ZF1, : 1 : 8 : 70 entities Detail
Interaction partners 1. RBM5-ZF1, : 31 interactors Detail
Experiments performed 3 experiments Detail
NMR combined restraints 4 contents Detail
Keywords NMR, RanBP2, RBM5, RNA, Zinc finger