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NMR resonance assignment of the UUP protein C-terminal domain
Authors
Carlier, L., Haase, S.A.S., Lequin, O.
Assembly
UUP protein C-terminal domain
Entity
1. UUP protein C-terminal domain (polymer, Thiol state: not present), 112 monomers, 12562.89 Da Detail

GSHMGQQEQY VALKQPAVKK TEEAAAAKAE TVKRSSSKLS YKLQRELEQL PQLLEDLEAK LEALQTQVAD ASFFSQPHEQ TQKVLADMAA AEQELEQAFE RWEYLEALKN GG


Formula weight
12562.89 Da
Source organism
Escherichia coli
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.4 %, Completeness: 94.2 %, Completeness (bb): 94.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All94.2 % (1240 of 1316)94.2 % (651 of 691)95.2 % (476 of 500)90.4 % (113 of 125)
Backbone94.6 % (630 of 666)93.8 % (211 of 225)95.5 % (317 of 332)93.6 % (102 of 109)
Sidechain94.3 % (715 of 758)94.4 % (440 of 466)95.7 % (264 of 276)68.8 % (11 of 16)
Aromatic89.2 % (66 of 74)94.6 % (35 of 37)83.3 % (30 of 36)100.0 % (1 of 1)
Methyl100.0 % (118 of 118)100.0 % (59 of 59)100.0 % (59 of 59)

1. UUP

GSHMGQQEQY VALKQPAVKK TEEAAAAKAE TVKRSSSKLS YKLQRELEQL PQLLEDLEAK LEALQTQVAD ASFFSQPHEQ TQKVLADMAA AEQELEQAFE RWEYLEALKN GG

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 7.0, Details Uniformly 15N labeled sample


#NameIsotope labelingTypeConcentration
1UUP[U-100% 15N]0.7 mM
2sodium chloridenatural abundance170 mM
3sodium phosphatenatural abundance30 mM
4DSSnatural abundance0.111 mM
5leupeptinenatural abundance1 uM
6pepstatinenatural abundance1 uM
7sodium azidenatural abundance0.02 %
8H2Onatural abundance90 %
9D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 7.0, Details Uniformly 15N/13C double labeled sample


#NameIsotope labelingTypeConcentration
10UUP[U-100% 13C; U-100% 15N]0.9 mM
11sodium chloridenatural abundance170 mM
12sodium phosphatenatural abundance30 mM
13DSSnatural abundance0.111 mM
14leupeptinenatural abundance1 uM
15pepstatine Anatural abundance1 uM
16sodium azidenatural abundance0.02 %
17H2Onatural abundance90 %
18D2Onatural abundance10 %
Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 7.0, Details Uniformly 15N/13C double labeled sample in D2O


#NameIsotope labelingTypeConcentration
19UUP[U-100% 13C; U-100% 15N]0.8 mM
20sodium chloridenatural abundance170 mM
21sodium phosphatenatural abundance30 mM
22leupeptinenatural abundance1 uM
23pepstatine Anatural abundance1 uM
24sodium azidenatural abundance0.02 %
25D2Onatural abundance100 %

LACS Plot; CA
Referencing offset: -0.11 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.11 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.03 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2LW1, Strand ID: A Detail


Release date
2012-01-30
Citation
Secondary structure and NMR resonance assignments of the C-terminal DNA-binding domain of Uup protein
Carlier, L., Haase, A., Burgos Zepeda, M.Y., Dassa, E., Lequin, O.
Biomol. NMR Assign. (2012), 6, 197-200, PubMed 22287065 , DOI 10.1007/s12104-012-9356-3 ,
Related entities 1. UUP protein C-terminal domain, : 2 : 1 entities Detail
Interaction partners 1. UUP protein C-terminal domain, : 10 interactors Detail
Experiments performed 15 experiments Detail
NMR combined restraints 5 contents Detail