Search

Solution structure of the yeast Sti1 DP1 domain
Authors
Schmid, A.B., Lagleder, S., Graewert, M.A., Roehl, A., Hagn, F., Wandinger, S.K., Cox, M.B., Demmer, O., Richter, K., Groll, M., Kessler, H., Buchner, J.
Assembly
DP1
Entity
1. DP1 (polymer), 71 monomers, 7928.201 Da Detail

QPDLGLTQLF ADPNLIENLK KNPKTSEMMK DPQLVAKLIG YKQNPQAIGQ DLFTDPRLMT IMATLMGVDL N


Formula weight
7928.201 Da
Source organism
Saccharomyces cerevisiae
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 97.5 %, Completeness (bb): 97.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All97.5 % (831 of 852)96.7 % (434 of 449)98.2 % (321 of 327)100.0 % (76 of 76)
Backbone97.6 % (404 of 414)97.1 % (136 of 140)97.1 % (203 of 209)100.0 % (65 of 65)
Sidechain97.8 % (494 of 505)96.4 % (298 of 309)100.0 % (185 of 185)100.0 % (11 of 11)
Aromatic100.0 % (28 of 28)100.0 % (14 of 14)100.0 % (14 of 14)
Methyl100.0 % (86 of 86)100.0 % (43 of 43)100.0 % (43 of 43)

1. DP1

QPDLGLTQLF ADPNLIENLK KNPKTSEMMK DPQLVAKLIG YKQNPQAIGQ DLFTDPRLMT IMATLMGVDL N

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 7.5


#NameIsotope labelingTypeConcentration
1DP1[U-99% 13C; U-99% 15N]0.5 ~ 3.0 mM
2potassium chloridenatural abundance50 mM
3potassium phosphatenatural abundance50 mM
4sodium azidenatural abundance0.2 w/v
5H2Onatural abundance95 %
6D2Onatural abundance5 %
Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 7.5


#NameIsotope labelingTypeConcentration
7DP1natural abundance0.5 mM
8potassium chloridenatural abundance50 mM
9potassium phosphatenatural abundance50 mM
10sodium azidenatural abundance0.2 w/v
11H2Onatural abundance95 %
12D2Onatural abundance5 %
Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 293 K, pH 7.5


#NameIsotope labelingTypeConcentration
13DP1[U-99% 15N]0.5 mM
14potassium chloridenatural abundance50 mM
15potassium phosphatenatural abundance50 mM
16sodium azidenatural abundance0.2 w/v
17H2Onatural abundance95 %
18D2Onatural abundance5 %

LACS Plot; CA
Referencing offset: 0.26 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: 0.26 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: 0.16 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.18 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 21 models in PDB: 2LLV, Strand ID: A Detail


Release date
2012-01-10
Citation
The architecture of functional modules in the Hsp90 co-chaperone Sti1/Hop
Schmid, A.B., Lagleder, S., Grawert, M., Rohl, A., Hagn, F., Wandinger, S.K., Cox, M.B., Demmer, O., Richter, K., Groll, M., Kessler, H., Buchner, J.
EMBO J. (2012), 31, 1506-1517, PubMed 22227520 , DOI 10.1038/emboj.2011.472 ,
Related entities 1. DP1, : 1 : 2 : 39 entities Detail
Interaction partners 1. DP1, : 41 interactors Detail
Experiments performed 23 experiments Detail
NMR combined restraints 3 contents Detail
Keywords Alpha helix, DP domain, Monomer, Protein, Solution NMR