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13C, 15N solid-state MAS NMR chemical shift assignment for YadA membrane anchor domain.
Authors
Shahid, S.AHMAD., Markovic, S., Bardiaux, B., Habeck, M., Linke, D., van Rossum, B.
Assembly
YadA membrane anchor domain
Entity
1. YadA membrane anchor domain (polymer, Thiol state: not present), 105 monomers, 11275.36 × 3 Da Detail

GDQASWSHPQ FEKGAHKFRQ LDNRLDKLDT RVDKGLASSA ALNSLFQPYG VGKVNFTAGV GGYRSSQALA IGSGYRVNES VALKAGVAYA GSSDVMYNAS FNIEW


Total weight
33826.082 Da
Max. entity weight
11275.36 Da
Source organism
Escherichia coli
Exptl. method
NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 91.4 %, Completeness: 83.8 %, Completeness (bb): 88.2 % Detail

Polymer type: polypeptide(L)

Total13C15N
All83.8 % (476 of 568)85.0 % (384 of 452)79.3 % (92 of 116)
Backbone88.2 % (358 of 406)88.1 % (267 of 303)88.3 % (91 of 103)
Sidechain78.4 % (200 of 255)82.2 % (199 of 242) 7.7 % (1 of 13)
Aromatic54.1 % (33 of 61)55.9 % (33 of 59) 0.0 % (0 of 2)
Methyl94.1 % (48 of 51)94.1 % (48 of 51)

1. YadA membrane anchor domain

GDQASWSHPQ FEKGAHKFRQ LDNRLDKLDT RVDKGLASSA ALNSLFQPYG VGKVNFTAGV GGYRSSQALA IGSGYRVNES VALKAGVAYA GSSDVMYNAS FNIEW

Sample

Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7


#NameIsotope labelingTypeConcentration
1YadA membrane anchor domain[U-13C; U-15N]11.5 M

LACS Plot; CA
Referencing offset: -0.31 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.31 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.05 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2LME, Strand ID: A, B, C Detail


Release date
2012-11-08
Citation
Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR
Shahid, S.A., Markovic, S., Linke, D., van Rossum, B.
Sci. Rep. (2012), 2, 803-803, PubMed 23150774 , DOI 10.1038/srep00803 ,
Related entities 1. YadA membrane anchor domain, : 1 : 2 : 2 entities Detail
Experiments performed 25 experiments Detail
NMR combined restraints 5 contents Detail
Keywords Adhesins, beta barrel, Solid-state MAS NMR, Trimeric Autotransporters