13C, 15N solid-state MAS NMR chemical shift assignment for YadA membrane anchor domain.
GDQASWSHPQ FEKGAHKFRQ LDNRLDKLDT RVDKGLASSA ALNSLFQPYG VGKVNFTAGV GGYRSSQALA IGSGYRVNES VALKAGVAYA GSSDVMYNAS FNIEW
Polymer type: polypeptide(L)
Total | 13C | 15N | |
---|---|---|---|
All | 83.8 % (476 of 568) | 85.0 % (384 of 452) | 79.3 % (92 of 116) |
Backbone | 88.2 % (358 of 406) | 88.1 % (267 of 303) | 88.3 % (91 of 103) |
Sidechain | 78.4 % (200 of 255) | 82.2 % (199 of 242) | 7.7 % (1 of 13) |
Aromatic | 54.1 % (33 of 61) | 55.9 % (33 of 59) | 0.0 % (0 of 2) |
Methyl | 94.1 % (48 of 51) | 94.1 % (48 of 51) |
1. YadA membrane anchor domain
GDQASWSHPQ FEKGAHKFRQ LDNRLDKLDT RVDKGLASSA ALNSLFQPYG VGKVNFTAGV GGYRSSQALA IGSGYRVNES VALKAGVAYA GSSDVMYNAS FNIEWSolvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | Adamantane | methylene carbons | 38.48 ppm | external | direct | 1.0 |
15N | calculated from 13C SR | methylene carbons | 38.48 ppm | external | direct | 0.0 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | Adamantane | methylene carbons | 38.48 ppm | external | direct | 1.0 |
15N | calculated from 13C SR | methylene carbons | 38.48 ppm | external | direct | 0.0 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | Adamantane | methylene carbons | 38.48 ppm | external | direct | 1.0 |
15N | calculated from 13C SR | methylene carbons | 38.48 ppm | external | direct | 0.0 |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 700 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 600 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 600 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 600 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 600 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Bruker Avance - 900 MHz
State solid, Solvent system NA, Pressure 1 atm, Temperature 275 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | YadA membrane anchor domain | [U-13C; U-15N] | 11.5 M |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_18108_2lme.nef |
Input source #2: Coordindates | 2lme.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 105 | 0 | 0 | 100.0 |
B | B | 105 | 0 | 0 | 100.0 |
C | C | 105 | 0 | 0 | 100.0 |
Content subtype: combined_18108_2lme.nef
Assigned chemical shifts
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ...........EKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
Comp_index_ID | Comp_ID | Atom_ID | CS value (ppm) |
---|---|---|---|
20 | GLN | CD | 179.695 |
23 | ASN | CG | 177.813 |
24 | ARG | CZ | 160.095 |
26 | ASP | CG | 179.62 |
29 | ASP | CG | 179.841 |
31 | ARG | CZ | 160.644 |
33 | ASP | CG | 178.801 |
43 | ASN | CG | 178.87 |
47 | GLN | CD | 179.223 |
48 | PRO | N | 132.351 |
49 | TYR | CZ | 158.617 |
56 | PHE | CG | 139.867 |
63 | TYR | CG | 129.433 |
63 | TYR | CZ | 158.266 |
64 | ARG | CZ | 159.645 |
67 | GLN | CD | 180.144 |
75 | TYR | CZ | 158.358 |
76 | ARG | CZ | 159.404 |
78 | ASN | CG | 176.192 |
79 | GLU | CD | 183.46 |
89 | TYR | CZ | 159.662 |
94 | ASP | CG | 179.842 |
97 | TYR | CZ | 158.709 |
98 | ASN | CG | 177.022 |
101 | PHE | CG | 139.113 |
102 | ASN | CG | 177.256 |
104 | GLU | CD | 183.589 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 452 | 376 | 83.2 |
15N chemical shifts | 121 | 88 | 72.7 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 210 | 181 | 86.2 |
15N chemical shifts | 103 | 88 | 85.4 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 242 | 195 | 80.6 |
15N chemical shifts | 18 | 0 | 0.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 52 | 49 | 94.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 59 | 33 | 55.9 |
15N chemical shifts | 2 | 0 | 0.0 |
Distance restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ...AS......EKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ...AS......EKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ...AS......EKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| | | | | ||||||| ||||||| ............KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL.....V.KVNFTAGVGGYRSS.ALAIGSG.R.N.S.A.KAGVAYA...DVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| | | | | ||||||| ||||||| ............KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL.....V.KVNFTAGVGGYRSS.ALAIGSG.R.N.S.A.KAGVAYA...DVMYNAS ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| | | | | ||||||| ||||||| ............KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL.....V.KVNFTAGVGGYRSS.ALAIGSG.R.N.S.A.KAGVAYA...DVMYNAS ----- FNIEW ||||| FNIEW
Dihedral angle restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||| ||||| | ..............AHKFRQLDNRLDKLDTRVDKGL..SAALN.........KVNFTAGVGGYR.SQALAIGSGYRV..SVALKAGVAYAG..DVMYN.S ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||| ||||| | ..............AHKFRQLDNRLDKLDTRVDKGL..SAALN.........KVNFTAGVGGYR.SQALAIGSGYRV..SVALKAGVAYAG..DVMYN.S ----- FNIEW ||||| FNIEW
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS |||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||| ||||| | ..............AHKFRQLDNRLDKLDTRVDKGL..SAALN.........KVNFTAGVGGYR.SQALAIGSGYRV..SVALKAGVAYAG..DVMYN.S ----- FNIEW ||||| FNIEW