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1H, 13C, and 15N chemical shift assignments for CdnLNt from Myxoccoccus xanthus
Authors
Jimenez, M., Padmanabhan, S.
Assembly
CdnL N-terminal domain
Entity
1. CdnL N-terminal domain (polymer, Thiol state: not present), 71 monomers, 7776.815 Da Detail

AGHMQTSFKT GDKAVYPGQG VGEVMGIEHT EVAGQRQSFY VLRILENGMR IMIPINKVGS VGLREIISEE D


Formula weight
7776.815 Da
Source organism
Myxococcus xanthus
Exptl. method
solution NMR
Refine. method
simulated annealing, molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete1
Sequence coverage: 98.6 %, Completeness: 93.3 %, Completeness (bb): 92.7 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All93.3 % (753 of 807)97.4 % (409 of 420)87.8 % (274 of 312)93.3 % (70 of 75)
Backbone92.7 % (391 of 422)96.0 % (144 of 150)90.1 % (183 of 203)92.8 % (64 of 69)
Sidechain94.4 % (421 of 446)98.1 % (265 of 270)88.2 % (150 of 170)100.0 % (6 of 6)
Aromatic59.1 % (26 of 44)95.5 % (21 of 22)22.7 % (5 of 22)
Methyl100.0 % (80 of 80)100.0 % (40 of 40)100.0 % (40 of 40)

1. CdnL N-terminal domain

AGHMQTSFKT GDKAVYPGQG VGEVMGIEHT EVAGQRQSFY VLRILENGMR IMIPINKVGS VGLREIISEE D

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
1CdnL N-terminal domainnatural abundance1 mM
2sodium phosphatenatural abundance50 mM
3sodium chloridenatural abundance100 mM
4sodium azidenatural abundance0.05 %
5DSSnatural abundance0.5 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
6CdnL N-terminal domainnatural abundance1 mM
7sodium phosphatenatural abundance50 mM
8sodium chloridenatural abundance100 mM
9sodium azidenatural abundance0.05 %
10DSSnatural abundance0.5 mM
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
11CdnL N-terminal domain[U-100% 13C; U-100% 15N]1 mM
12sodium phosphatenatural abundance50 mM
13sodium chloridenatural abundance100 mM
14sodium azidenatural abundance0.05 %
15DSSnatural abundance0.5 mM
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
16CdnL N-terminal domain[U-100% 13C; U-100% 15N]1 mM
17sodium phosphatenatural abundance50 mM
18sodium chloridenatural abundance100 mM
19sodium azidenatural abundance0.05 %
20DSSnatural abundance0.5 mM
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
21CdnL N-terminal domain[U-100% 13C; U-100% 15N]0.5 mM
22sodium phosphatenatural abundance50 mM
23sodium chloridenatural abundance100 mM
24sodium azidenatural abundance0.05 %
25DSSnatural abundance0.25 mM

Chem. Shift Complete2
Sequence coverage: 97.2 %, Completeness: 75.1 %, Completeness (bb): 85.7 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All75.1 % (1212 of 1614)72.3 % (607 of 840)74.5 % (465 of 624)93.3 % (140 of 150)
Backbone85.7 % (723 of 844)83.3 % (250 of 300)85.0 % (345 of 406)92.8 % (128 of 138)
Sidechain65.9 % (588 of 892)66.1 % (357 of 540)64.4 % (219 of 340)100.0 % (12 of 12)
Aromatic39.8 % (35 of 88)68.2 % (30 of 44)11.4 % (5 of 44)
Methyl68.1 % (109 of 160)68.8 % (55 of 80)67.5 % (54 of 80)

1. CdnL N-terminal domain

AGHMQTSFKT GDKAVYPGQG VGEVMGIEHT EVAGQRQSFY VLRILENGMR IMIPINKVGS VGLREIISEE D

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
1CdnL N-terminal domainnatural abundance1 mM
2sodium phosphatenatural abundance50 mM
3sodium chloridenatural abundance100 mM
4sodium azidenatural abundance0.05 %
5DSSnatural abundance0.5 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
6CdnL N-terminal domainnatural abundance1 mM
7sodium phosphatenatural abundance50 mM
8sodium chloridenatural abundance100 mM
9sodium azidenatural abundance0.05 %
10DSSnatural abundance0.5 mM
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
11CdnL N-terminal domain[U-100% 13C; U-100% 15N]1 mM
12sodium phosphatenatural abundance50 mM
13sodium chloridenatural abundance100 mM
14sodium azidenatural abundance0.05 %
15DSSnatural abundance0.5 mM
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
16CdnL N-terminal domain[U-100% 13C; U-100% 15N]1 mM
17sodium phosphatenatural abundance50 mM
18sodium chloridenatural abundance100 mM
19sodium azidenatural abundance0.05 %
20DSSnatural abundance0.5 mM
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
21CdnL N-terminal domain[U-100% 13C; U-100% 15N]0.5 mM
22sodium phosphatenatural abundance50 mM
23sodium chloridenatural abundance100 mM
24sodium azidenatural abundance0.05 %
25DSSnatural abundance0.25 mM

LACS Plot; CA
Referencing offset: -0.26 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.26 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.38 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2LT4, Strand ID: A Detail


Release date
2012-03-08
Citation
(1)H, (13)C and (15)N assignments of CdnL, an essential protein in Myxococcus xanthus
Mirassou, Y., Elias-Arnanz, M., Padmanabhan, S., Jimenez, M.
Biomol. NMR Assign. (2013), 7, 51-55, PubMed 22392343 , DOI 10.1007/s12104-012-9375-0 ,
Entries sharing articles BMRB: 1 entries Detail
  BMRB: 18151 released on 2012-03-08
    Title 1H, 13C, and 15N chemical shift assignments for CdnL from Myxoccoccus xanthus
Related entities 1. CdnL N-terminal domain, : 1 : 1 : 15 entities Detail
Experiments performed 26 experiments Detail
NMR combined restraints 5 contents Detail
Keywords CarD_TRCF, CdnL, Myxococcus xanthus, PF02559, RNA polymerase interacting domain