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1H, 13C, and 15N chemical shift assignments for CdnL from Myxoccoccus xanthus
Authors
Jimenez, M., Padmanabhan, S., Mirassou, Y.
Assembly
CdnL
Entity
1. CdnL (polymer, Thiol state: all free), 167 monomers, 18999.60 Da Detail

GSHMQTSFKT GDKAVYPGQG VGEVMGIEHT EVAGQRQSFY VLRILENGMR IMIPINKVGS VGLREIISEE DVKQVYSILK EKDISVDSTT WNRRYREYME KIKTGSVFEI AEVLRDLYLL KGDKDLSFGE RKMLDTARSL LIKELSLAKD CSEDEIESDL KKIFNLA


Formula weight
18999.6 Da
Source organism
Myxococcus xanthus
Exptl. method
solution NMR
Refine. method
simulated annealing, molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.2 %, Completeness: 81.8 %, Completeness (bb): 86.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All81.8 % (1621 of 1981)86.8 % (899 of 1036)72.7 % (560 of 770)92.6 % (162 of 175)
Backbone86.6 % (864 of 998)91.3 % (315 of 345)81.4 % (397 of 488)92.1 % (152 of 165)
Sidechain75.0 % (853 of 1137)84.5 % (584 of 691)59.4 % (259 of 436)100.0 % (10 of 10)
Aromatic55.9 % (66 of 118)94.9 % (56 of 59)15.5 % (9 of 58)100.0 % (1 of 1)
Methyl92.3 % (179 of 194)95.9 % (93 of 97)88.7 % (86 of 97)

1. CdnL

GSHMQTSFKT GDKAVYPGQG VGEVMGIEHT EVAGQRQSFY VLRILENGMR IMIPINKVGS VGLREIISEE DVKQVYSILK EKDISVDSTT WNRRYREYME KIKTGSVFEI AEVLRDLYLL KGDKDLSFGE RKMLDTARSL LIKELSLAKD CSEDEIESDL KKIFNLA

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
1CdnLnatural abundance1 mM
2sodium phosphatenatural abundance50 mM
3sodium chloridenatural abundance100 mM
4sodium azidenatural abundance0.05 %
5beta-mercaptoethanolnatural abundance2 mM
6DSSnatural abundance0.5 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
7CdnLnatural abundance1 mM
8sodium phosphatenatural abundance50 mM
9sodium chloridenatural abundance100 mM
10sodium azidenatural abundance0.05 %
11beta-mercaptoethanolnatural abundance2 mM
12DSSnatural abundance0.5 mM
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
13CdnL[U-100% 13C; U-100% 15N]1 mM
14sodium phosphatenatural abundance50 mM
15sodium chloridenatural abundance100 mM
16sodium azidenatural abundance0.05 %
17beta-mercaptoethanolnatural abundance2 mM
18DSSnatural abundance0.5 mM
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
19CdnL[U-100% 13C; U-100% 15N]1 mM
20sodium phosphatenatural abundance50 mM
21sodium chloridenatural abundance100 mM
22sodium azidenatural abundance0.05 %
23beta-mercaptoethanolnatural abundance2 mM
24DSSnatural abundance0.5 mM
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
25CdnLnatural abundance0.25 mM
26sodium phosphatenatural abundance50 mM
27sodium chloridenatural abundance100 mM
28sodium azidenatural abundance0.05 %
29beta-mercaptoethanolnatural abundance2 mM
30DSSnatural abundance0.1 mM
Sample #6

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
31CdnLnatural abundance0.25 mM
32sodium phosphatenatural abundance50 mM
33sodium chloridenatural abundance100 mM
34sodium azidenatural abundance0.05 %
35beta-mercaptoethanolnatural abundance2 mM
36DSSnatural abundance0.1 mM
Sample #7

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±0.1) K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
37CdnL[U-100% 13C; U-100% 15N]0.25 mM
38sodium phosphatenatural abundance50 mM
39sodium chloridenatural abundance100 mM
40sodium azidenatural abundance0.05 %
41beta-mercaptoethanolnatural abundance2 mM
42DSSnatural abundance0.5 mM

LACS Plot; CA
Referencing offset: -0.02 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.02 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.02 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.11 ppm, Outliers: 4 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2LWJ, Strand ID: A Detail


Release date
2012-03-08
Citation
(1)H, (13)C and (15)N assignments of CdnL, an essential protein in Myxococcus xanthus
Mirassou, Y., Elias-Arnanz, M., Padmanabhan, S., Jimenez, M.
Biomol. NMR Assign. (2013), 7, 51-55, PubMed 22392343 , DOI 10.1007/s12104-012-9375-0 ,
Related entities 1. CdnL, : 1 : 36 entities Detail
Experiments performed 21 experiments Detail
NMR combined restraints 4 contents Detail
Keywords CarD_TRCF, CdnL, Myxococcus xanthus, PF02559, RNA polymerase interacting domain