BMRBj - BMREntryMaster

Found 1 Document (0.681 seconds)

BMRB: 18201

2M5J

1H, 13C and 15N resonance assignments of the periplasmic signaling domain of HasR, a TonB-dependent outer membrane heme transporter

Authors

Malki, I., Cardoso de Amorim, G., Simenel, C., Prochnicka-Chalufour, A., Delepierre, M., Izadi-Pruneyre, N.

Assembly

HasR N-terminal periplasmic signaling domain

Entity

1. HasR N-terminal periplasmic signaling domain (polymer, Thiol state: not present), 107 monomers, 11099.52 Da Detail

SMAQAAQQKN FNIAAQPLQS AMLRFAEQAG MQVFFDEVKL DGMQAAALNG SMSVEQGLRR LIGGNPVAFR LQPQGQIVLS RLPTANGDGG ALALDSLTVL GAGGNNA

Formula weight

11099.52 Da

Source organism

Serratia marcescens

Exptl. method

solution NMR

Refine. method

simulated annealing, torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.1 %, Completeness: 89.7 %, Completeness (bb): 97.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	89.7 % (1054 of 1175)	87.7 % (534 of 609)	92.1 % (409 of 444)	91.0 % (111 of 122)
Backbone	97.2 % (616 of 634)	96.9 % (216 of 223)	97.1 % (299 of 308)	98.1 % (101 of 103)
Sidechain	83.6 % (531 of 635)	82.4 % (318 of 386)	88.3 % (203 of 230)	52.6 % (10 of 19)
Aromatic	54.0 % (27 of 50)	68.0 % (17 of 25)	40.0 % (10 of 25)
Methyl	96.0 % (121 of 126)	96.8 % (61 of 63)	95.2 % (60 of 63)

1. HasR N-terminal periplasmic signaling domain

SMAQAAQQKN FNIAAQPLQS AMLRFAEQAG MQVFFDEVKL DGMQAAALNG SMSVEQGLRR LIGGNPVAFR LQPQGQIVLS RLPTANGDGG ALALDSLTVL GAGGNNA

Show sample condition

Sample

Solvent system 85% H2O/15% D2O, Pressure 1 atm, Temperature 293 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	HasR_N-terminal_periplasmic_signaling_domain	[U-99% 13C; U-99% 15N]	0.5 mM
2	Sodium phosphate	natural abundance	50 mM
3	NaCl	natural abundance	50 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.18 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2M5J, Strand ID: A Detail

Release date

2012-03-22

Citation

(1)H, (13)C and (15)N resonance assignments of the periplasmic signalling domain of HasR, a TonB-dependent outer membrane heme transporter
Malki, I., Cardoso de Amorim, G., Simenel, C., Prochnicka-Chalufour, A., Delepierre, M., Izadi-Pruneyre, N.
Biomol. NMR Assign. (2013), 7, 43-46, PubMed 22415545 , DOI 10.1007/s12104-012-9377-y , Abstract

Related entities 1. HasR N-terminal periplasmic signaling domain, : 1 : 4 : 10 entities Detail

Experiments performed 10 experiments Detail

1 2D 1H-15N HSQC