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NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad2
Authors
Lafrance-Vanasse, J., Legault, P., Omichinski, J.
Assembly
complex between the PH domain of the Tfb1 subunit from TFIIH and Rad2
Entity
1. Tfb1 (polymer), 119 monomers, 13228.85 Da Detail

PSHSGAAIFE KVSGIIAINE DVSPAELTWR STDGDKVHTV VLSTIDKLQA TPASSEKMML RLIGKVDESK KRKDNEGNEV VPKPQRHMFS FNNRTVMDNI KMTLQQIISR YKDADGNSS


2. Rad2 (polymer), 52 monomers, 6007.186 Da Detail

GSEILERESE KESSNDENKD DDLEVLSEEL FEDVPTKSQI SKEAEDNDSR KY


Total weight
19236.035 Da
Max. entity weight
13228.85 Da
Source organism
Saccharomyces cerevisiae
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 95.9 %, Completeness: 90.5 %, Completeness (bb): 92.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All90.5 % (1773 of 1959)88.7 % (914 of 1030)92.2 % (690 of 748)93.4 % (169 of 181)
Backbone92.4 % (937 of 1014)89.8 % (308 of 343)94.1 % (476 of 506)92.7 % (153 of 165)
Sidechain89.6 % (994 of 1109)88.2 % (606 of 687)91.6 % (372 of 406)100.0 % (16 of 16)
Aromatic70.0 % (56 of 80)70.0 % (28 of 40)69.2 % (27 of 39)100.0 % (1 of 1)
Methyl95.6 % (153 of 160)97.5 % (78 of 80)93.8 % (75 of 80)

1. Tfb1

PSHSGAAIFE KVSGIIAINE DVSPAELTWR STDGDKVHTV VLSTIDKLQA TPASSEKMML RLIGKVDESK KRKDNEGNEV VPKPQRHMFS FNNRTVMDNI KMTLQQIISR YKDADGNSS

2. Rad2

GSEILERESE KESSNDENKD DDLEVLSEEL FEDVPTKSQI SKEAEDNDSR KY

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
1Tfb1[U-100% 13C; U-100% 15N]1 mM
2Rad2natural abundance1.25 mM
3sodium phosphatenatural abundance20 mM
4EDTAnatural abundance1 mM
5DTTnatural abundance1 mM
6H2Onatural abundance90 %
7D2Onatural abundance10 %
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
8Tfb1[U-100% 13C; U-100% 15N]1 mM
9Rad2natural abundance1.25 mM
10sodium phosphatenatural abundance20 mM
11EDTAnatural abundance1 mM
12DTTnatural abundance1 mM
13D2Onatural abundance100 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
14Tfb1[U-100% 15N]1 mM
15Rad2natural abundance1.25 mM
16sodium phosphatenatural abundance20 mM
17EDTAnatural abundance1 mM
18DTTnatural abundance1 mM
19H2Onatural abundance90 %
20D2Onatural abundance10 %
Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
21Tfb1natural abundance1.25 mM
22Rad2[U-100% 13C; U-100% 15N]1 mM
23sodium phosphatenatural abundance20 mM
24EDTAnatural abundance1 mM
25DTTnatural abundance1 mM
26H2Onatural abundance90 %
27D2Onatural abundance10 %
Sample #5

Solvent system 100% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
28Tfb1natural abundance1.25 mM
29Rad2[U-100% 13C; U-100% 15N]1 mM
30sodium phosphatenatural abundance20 mM
31EDTAnatural abundance1 mM
32DTTnatural abundance1 mM
33D2Onatural abundance100 %
Sample #6

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 300 K, pH 6.5


#NameIsotope labelingTypeConcentration
34Tfb1natural abundance1.25 mM
35Rad2[U-100% 15N]1 mM
36sodium phosphatenatural abundance20 mM
37EDTAnatural abundance1 mM
38DTTnatural abundance1 mM
39H2Onatural abundance90 %
40D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: -0.14 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.14 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.08 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 2LOX, Strand ID: A, B Detail


Release date
2012-03-01
Citation
Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2
Lafrance-Vanasse, J., Arseneault, G., Cappadocia, L., Chen, H., Legault, P., Omichinski, J.G.
Nucleic Acids Res. (2012), 40, 5739-5750, PubMed 22373916 , DOI 10.1093/nar/gks194 ,
Related entities 1. Tfb1, : 2 : 4 entities Detail
Related entities 2. Rad2, : 1 : 2 entities Detail
Interaction partners 1. Tfb1, : 49 interactors Detail
Interaction partners 2. Rad2, : 8 interactors Detail
Experiments performed 18 experiments Detail
NMR combined restraints 5 contents Detail
Keywords Rad2, Tfb1, TFIIH