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Retro Trp-cage peptide
Authors
Bathula, S., Sklenar, V., Zidek, L., Vondrasek, J., Vymetal, J.
Assembly
Retro Trp-cage peptide
Entity
1. Retro Trp-cage peptide (polymer, Thiol state: not present), 20 monomers, 2169.396 Da Detail

SPPPRGSSPG GDKLWQIYLN


Formula weight
2169.396 Da
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 89.3 %, Completeness (bb): 80.2 % Detail

Polymer type: polypeptide(L)

Total1H13C
All89.3 % (191 of 214)99.2 % (124 of 125)75.3 % (67 of 89)
Backbone80.2 % (77 of 96)97.4 % (38 of 39)68.4 % (39 of 57)
Sidechain97.0 % (131 of 135)100.0 % (86 of 86)91.8 % (45 of 49)
Aromatic78.9 % (15 of 19)100.0 % (10 of 10)55.6 % (5 of 9)
Methyl100.0 % (12 of 12)100.0 % (6 of 6)100.0 % (6 of 6)

1. Retro Trp-cage peptide

SPPPRGSSPG GDKLWQIYLN

Sample

Solvent system trifluoroethanol/water, Pressure 1 atm, Temperature 275 K, pH 7.0


#NameIsotope labelingTypeConcentration
1H2Onatural abundance60 %
2D2O[U-100% 2H]10 %
3TFE[U-99% 2H]30 %
4sodium azidenatural abundance0.03 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2LUF, Strand ID: A Detail


Release date
2012-07-12
Citation
From a Structure to Disorder. Retro Operation on the Trp-cage Miniprotein Sequence Produces an Unstructured Molecule Capable of Folding Similar to the Original Only upon TFE Addition
Vymetal, J., Bathula, S., Cerny, J., Chaloupkova, R., Zidek, L., Sklenar, V., Vondrasek, J.
Protein Eng. Des. Sel.
Related entities 1. Retro Trp-cage peptide, : 1 entities Detail
Experiments performed 3 experiments Detail
NMR combined restraints 3 contents Detail
Keywords NMR, retro, Trp cage