Structure of N-terminal domain of a plant Grx
MASAVKSLTE TELLPITEAD SIPSASGVYA VYDKSDELQF VGISRNIAAS VSAHLKSVPE LCGSVKVGIV EEPDKAVLTQ AWKLWIEEHI KVTGKVPPGN KSGNNTFVKV TLEHHHHHH
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 90.7 % (1220 of 1345) | 90.9 % (626 of 689) | 90.3 % (483 of 535) | 91.7 % (111 of 121) |
Backbone | 91.6 % (643 of 702) | 92.5 % (221 of 239) | 91.1 % (319 of 350) | 91.2 % (103 of 113) |
Sidechain | 90.3 % (682 of 755) | 90.0 % (405 of 450) | 90.6 % (269 of 297) | 100.0 % (8 of 8) |
Aromatic | 71.7 % (66 of 92) | 71.7 % (33 of 46) | 70.5 % (31 of 44) | 100.0 % (2 of 2) |
Methyl | 96.8 % (149 of 154) | 96.1 % (74 of 77) | 97.4 % (75 of 77) |
1. N-terminal domain of a plant Grx
MASAVKSLTE TELLPITEAD SIPSASGVYA VYDKSDELQF VGISRNIAAS VSAHLKSVPE LCGSVKVGIV EEPDKAVLTQ AWKLWIEEHI KVTGKVPPGN KSGNNTFVKV TLEHHHHHHSolvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Bruker DMX - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Nterm_Grx | [U-13C; U-15N] | 0.5-1.0 mM | |
2 | sodium phosphate | natural abundance | 50 mM | |
3 | DTT | natural abundance | 10 mM | |
4 | DSS | natural abundance | 0.02 % | |
5 | D2O | [U-2H] | 0.1 v/v | |
6 | H2O | natural abundance | 90 % |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_18624_2lwf.nef |
Input source #2: Coordindates | 2lwf.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 ------170-------180 KSGNNTFVKVTLEHHHHHH ||||||||||||||||||| KSGNNTFVKVTLEHHHHHH -------110---------
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 119 | 0 | 0 | 100.0 |
Content subtype: combined_18624_2lwf.nef
Assigned chemical shifts
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ..SAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKV.PGN ------170-------180 KSGNNTFVKVTLEHHHHHH | ||||||||||||| | K.GNNTFVKVTLEHH...H
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 689 | 625 | 90.7 |
13C chemical shifts | 535 | 483 | 90.3 |
15N chemical shifts | 122 | 111 | 91.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 239 | 221 | 92.5 |
13C chemical shifts | 238 | 214 | 89.9 |
15N chemical shifts | 113 | 103 | 91.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 450 | 404 | 89.8 |
13C chemical shifts | 297 | 269 | 90.6 |
15N chemical shifts | 9 | 8 | 88.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 78 | 74 | 94.9 |
13C chemical shifts | 78 | 75 | 96.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 46 | 33 | 71.7 |
13C chemical shifts | 44 | 31 | 70.5 |
15N chemical shifts | 2 | 2 | 100.0 |
Distance restraints
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ..SAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKV.PGN -------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- ------170-------180 KSGNNTFVKVTLEHHHHHH | ||||||||||| K.GNNTFVKVTLE ------170----
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ..SAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKV.P.N -------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- ------170-------180 KSGNNTFVKVTLEHHHHHH | ||||||||||| K..NNTFVKVTLEH ------170-----
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ..SAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKV.PGN -------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- ------170-------180 KSGNNTFVKVTLEHHHHHH | |||||||||| | K..NNTFVKVTLE.H ------170------
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ...AVKSLTETELLPITEADSIPSASGVYAVY.K.D.LQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKV.PGN -------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- ------170-------180 KSGNNTFVKVTLEHHHHHH | |||||||||| K..NNTFVKVTLE ------170----
Dihedral angle restraints
-------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| .....KSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN -------70--------80--------90-------100-------110-------120-------130-------140-------150-------160- ------170-------180 KSGNNTFVKVTLEHHHHHH | ||||||| |||| K.GNNTFVK....HHHH ------170--------