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Structural study of NS2(32-57) GBVB protein
Authors
Montserret, R., Penin, F., Martin, A.
Assembly
NS2(32-57) GBVB protein
Entity
1. NS2(32-57) GBVB protein (polymer, Thiol state: not present), 26 monomers, 3407.795 Da Detail

RSALVNSYLW QRWENWFWNV TLRPER


Formula weight
3407.795 Da
Source organism
Hepatitis GB virus B
Exptl. method
solution NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 88.1 %, Completeness (bb): 75.2 % Detail

Polymer type: polypeptide(L)

Total1H13C
All88.1 % (280 of 318)94.6 % (174 of 184)79.1 % (106 of 134)
Backbone75.2 % (97 of 129)90.2 % (46 of 51)65.4 % (51 of 78)
Sidechain96.7 % (208 of 215)96.2 % (128 of 133)97.6 % (80 of 82)
Aromatic100.0 % (62 of 62)100.0 % (33 of 33)100.0 % (29 of 29)
Methyl87.5 % (21 of 24)83.3 % (10 of 12)91.7 % (11 of 12)

1. NS2 32-57 GBVB

RSALVNSYLW QRWENWFWNV TLRPER

Sample

Solvent system trifluoroethanol/water, Pressure 1 atm, Temperature 273 (±0.1) K, pH 6 (±1)


#NameIsotope labelingTypeConcentration
1NS2_32-57_GBVB[U-99% 2H]2 (±0.1) mM
2TFEnatural abundance50 (±1.0) % v/v
3H2Onatural abundance50 (±1.0) % v/v
4DSSnatural abundance0.2 (±0.05) uM

Protein Blocks Logo
Calculated from 36 models in PDB: 2LZQ, Strand ID: A Detail


Release date
2012-10-09
Citation
NS2 proteins of GB virus B and hepatitis C virus share common protease activities and membrane topologies
Boukadida, C., Marnata, C., Montserret, R., Cohen, L., Blumen, B., Gouttenoire, J., Moradpour, D., Penin, F., Martin, A.
J. Virol. (2014), 88, 7426-7444, PubMed 24741107 , DOI 10.1128/JVI.00656-14 ,
Related entities 1. NS2(32-57) GBVB protein, : 1 : 1 entities Detail
Experiments performed 3 experiments Detail
NMR combined restraints 3 contents Detail
Keywords GBVB, NS2, virus