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Solution Structure of the trans-membrane domain of the NS2A of dengue virus
Authors
Gayen, S., Kang, C.
Assembly
trans-membrane domain of the NS2A
Entity
1. trans-membrane domain of the NS2A (polymer, Thiol state: not present), 28 monomers, 2978.595 Da Detail

DIGMGVTYLA LLAAFKVRPT FAAGLLLR


Formula weight
2978.595 Da
Source organism
Dengue virus
Exptl. method
solution NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 59.8 %, Completeness (bb): 68.1 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All59.8 % (193 of 323)82.2 % (134 of 163)24.8 % (33 of 133)96.3 % (26 of 27)
Backbone68.1 % (113 of 166)98.3 % (57 of 58)37.0 % (30 of 81)96.3 % (26 of 27)
Sidechain45.1 % (82 of 182)73.3 % (77 of 105) 6.5 % (5 of 77)
Aromatic 0.0 % (0 of 28) 0.0 % (0 of 14) 0.0 % (0 of 14)
Methyl46.0 % (23 of 50)92.0 % (23 of 25) 0.0 % (0 of 25)

1. entity

DIGMGVTYLA LLAAFKVRPT FAAGLLLR

Sample

Solvent system 44.4%CDCl3/44.4CD3OH/11.2%H2O, Pressure 1 atm, Temperature 298 K


#NameIsotope labelingTypeConcentration
1entitynatural abundance3 mg/mL
2chloroform[U-2H]44.4 %
3methanol[U-2H]44.4 %
4H2Onatural abundance11.2 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2M0S, Strand ID: A Detail


Release date
2013-02-20
Citation
Membrane topology and function of dengue virus NS2A protein
Xie, X., Gayen, S., Kang, C., Yuan, Z., Shi, P.
J. Virol. (2013), 87, 4609-4622, PubMed 23408612 , DOI 10.1128/JVI.02424-12 ,
Related entities 1. trans-membrane domain of the NS2A, : 1 : 7 : 1 : 22 entities Detail
Interaction partners 1. trans-membrane domain of the NS2A, : 29 interactors Detail
Experiments performed 3 experiments Detail
NMR combined restraints 3 contents Detail
Keywords dengue, membrane protein, nonstructural protein, NS2A