High resolution structure and dynamics of CsPinA parvulin at physiological temperature
GPMGSMADKI KCSHILVKKQ GEALAVQERL KAGEKFGKLA KELSIDGGSA KRDGSLGYFG RGKMVKPFED AAFRLQVGEV SEPVKSEFGY HVIKRLG
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 88.1 % (994 of 1128) | 95.3 % (567 of 595) | 77.1 % (336 of 436) | 93.8 % (91 of 97) |
Backbone | 80.7 % (465 of 576) | 95.1 % (195 of 205) | 65.7 % (182 of 277) | 93.6 % (88 of 94) |
Sidechain | 96.1 % (610 of 635) | 95.4 % (372 of 390) | 97.1 % (235 of 242) | 100.0 % (3 of 3) |
Aromatic | 94.6 % (70 of 74) | 94.6 % (35 of 37) | 94.6 % (35 of 37) | |
Methyl | 100.0 % (92 of 92) | 100.0 % (46 of 46) | 100.0 % (46 of 46) |
1. CsPinA
GPMGSMADKI KCSHILVKKQ GEALAVQERL KAGEKFGKLA KELSIDGGSA KRDGSLGYFG RGKMVKPFED AAFRLQVGEV SEPVKSEFGY HVIKRLGSolvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Pressure 1 atm, Temperature 283 K, pH 7.4
Experiment name 2D 1H-15N HSQC (R1)
Pressure 1 atm, Temperature 283 K, pH 7.4
Experiment name 2D 1H-15N HSQC (R2)
Pressure 1 atm, Temperature 283 K, pH 7.4
Experiment name 2D 1H-15N HSQC (NOE)
Pressure 1 atm, Temperature 283 K, pH 7.4
Bruker Avance - 400 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Varian UnityPlus - 500 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 600 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 600 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 700 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 700 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 400 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Varian UnityPlus - 500 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 600 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 700 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 400 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Varian UnityPlus - 500 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 600 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 700 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Bruker Avance - 700 MHz
State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 283 K, pH 7.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | CsPinA | [U-100% 15N] | 0.9 mM | |
2 | H20 | natural abundance | 93 % | |
3 | D2O | natural abundance | 7 % |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_18864_2m1i.nef |
Input source #2: Coordindates | 2m1i.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20--------30--------40--------50--------60--------70--------80--------90------- GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 97 | 0 | 0 | 100.0 |
Content subtype: combined_18864_2m1i.nef
Assigned chemical shifts
--------10--------20--------30--------40--------50--------60--------70--------80--------90------- GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GPMGS.ADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 595 | 574 | 96.5 |
13C chemical shifts | 436 | 332 | 76.1 |
15N chemical shifts | 102 | 90 | 88.2 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 205 | 197 | 96.1 |
13C chemical shifts | 194 | 96 | 49.5 |
15N chemical shifts | 94 | 87 | 92.6 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 390 | 377 | 96.7 |
13C chemical shifts | 242 | 236 | 97.5 |
15N chemical shifts | 8 | 3 | 37.5 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 49 | 47 | 95.9 |
13C chemical shifts | 49 | 47 | 95.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 37 | 35 | 94.6 |
13C chemical shifts | 37 | 35 | 94.6 |
Distance restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90------- GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| GPMG.MADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSID.GSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG
--------10--------20--------30--------40--------50--------60--------70--------80--------90------- GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG |||||||| |||||||||||| ||||||||| ||| | | | | ||||||||| | | | | |||| | | .........IKCSHILV.KQGEALAVQERL....KFGKLAKEL.IDG..A...G..G.F.....VKPFEDAAF.L..G.....V.S..GYHV.K.L --------10--------20--------30--------40--------50--------60--------70--------80--------90------
Dihedral angle restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90------- GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| .PMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGS.GYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG