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BMRB: 18990

2M48

protein structure

Authors

Noh, Y.J., Mercier, P., Spratt, D.E., Shaw, G.S.

Assembly

protein

Entity

1. protein, entity 1 (polymer), 141 monomers, 15445.44 Da Detail

EEYVLQAGGV LCPQPGCGMG LLVEPDCRKV TCQNGCGYVF CRNCLQGYHI GECLPEGTGA SATNSCEYTV DPNRAAEARW DEASNVTIKV STKPCPKCRT PTERDGGCMH MVCTRAGCGF EWCWVCQTEW TRDCMGAHWF G

2. protein, entity ZN (non-polymer, Thiol state: not present), 65.409 × 4 Da

Total weight

15707.076 Da

Max. entity weight

15445.44 Da

Source organism

Drosophila melanogaster

Exptl. method

solution NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.3 %, Completeness: 89.1 %, Completeness (bb): 94.6 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	89.1 % (1363 of 1530)	86.5 % (684 of 791)	91.9 % (543 of 591)	91.9 % (136 of 148)
Backbone	94.6 % (785 of 830)	93.5 % (272 of 291)	95.8 % (389 of 406)	93.2 % (124 of 133)
Sidechain	84.7 % (698 of 824)	82.4 % (412 of 500)	88.7 % (274 of 309)	80.0 % (12 of 15)
Aromatic	82.1 % (110 of 134)	83.6 % (56 of 67)	79.0 % (49 of 62)	100.0 % (5 of 5)
Methyl	85.7 % (96 of 112)	85.7 % (48 of 56)	85.7 % (48 of 56)

1. entity 1

EEYVLQAGGV LCPQPGCGMG LLVEPDCRKV TCQNGCGYVF CRNCLQGYHI GECLPEGTGA SATNSCEYTV DPNRAAEARW DEASNVTIKV STKPCPKCRT PTERDGGCMH MVCTRAGCGF EWCWVCQTEW TRDCMGAHWF G

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5, Details Added Roche EDTA-free protease inhibitor cocktail (~10 uM) to limit proteolysis during data collection

#	Name	Isotope labeling	Concentration
1	TRIS	natural abundance	25 mM
2	sodium chloride	natural abundance	150 mM
3	DTT	natural abundance	5 mM
4	entity_1	[U-98% 15N]	500 uM
5	H20	natural abundance	90 %
6	D20	natural abundance	10 %

Sample #2

#	Name	Isotope labeling	Concentration
7	TRIS	natural abundance	25 mM
8	sodium chloride	natural abundance	150 mM
9	DTT	natural abundance	5 mM
10	entity_1	[U-98% 13C; U-98% 15N]	500 uM
11	H2O	natural abundance	90 %
12	D2O	natural abundance	10 %

Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5, Details Added Roche EDTA-free protease inhibitor cocktail (~10 uM) to limit proteolysis during data collection

#	Name	Isotope labeling	Concentration
13	TRIS	natural abundance	25 mM
14	sodium chloride	natural abundance	150 mM
15	DTT	natural abundance	5 mM
16	entity_1	[U-98% 13C; U-98% 15N]	500 uM
17	H2O	natural abundance	90 %
18	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.06 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.06 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 2 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.38 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2M48, Strand ID: A Detail

Release date

2012-01-23

Citation

A molecular explanation for the recessive nature of parkin-linked Parkinson's disease
Spratt, D.E., Martinez-Torres, R., Noh, Y.J., Mercier, P., Manczyk, N., Barber, K.R., Aguirre, J.D., Burchell, L., Purkiss, A., Walden, H., Shaw, G.S.
Nat. Commun. (2013), 4, 1983-1983, PubMed 23770917 , DOI 10.1038/ncomms2983 , Abstract