BMRB: 19038

The structure of the complex of cytochrome P450cam and its electron donor putidaredoxin determined by paramagnetic NMR spectroscopy

Authors

Hiruma, Y., Hass, M.A.S., Ubbink, M.

Assembly

complex of cytochrome P450cam and its electron donor putidaredoxin

Entity

1. complex of cytochrome P450cam and its electron donor putidaredoxin, entity 1 (polymer), 404 monomers, 45476.42 Da Detail

LAPLPPHVPE HLVFDFDMYN PSNLSAGVQE AWAVLQESNV PDLVWTRCNG GHWIATRGQL IREAYEDYRH FSSECPFIPR EAGEAYDFIP TSMDPPEQRQ FRALANQVVG MPVVDKLENR IQELACSLIE SLRPQGQCNF TEDYAEPFPI RIFMLLAGLP EEDIPHLKYL TDQMTRPDGS MTFAEAKEAL YDYLIPIIEQ RRQKPGTDAI SIVANGQVNG RPITSDEAKR MCGLLLVGGL DTVVNFLSFS MEFLAKSPEH RQELIQRPER IPAACEELLR RFSLVADGRI LTSDYEFHGV QLKKGDQILL PQMLSGLDER ENACPMHVDF SRQKVSHTTF GHGSHLCLGQ HLARREIIVT LKEWLTRIPD FSIAPGAQIQ HKSGIVSGVQ ALPLVWDPAT TKAV

2. complex of cytochrome P450cam and its electron donor putidaredoxin, entity 2 (polymer), 106 monomers, 11402.76 Da Detail

SKVVYVSHDG TRRELDVADG VSLMQAAVSN GIYDIVGDCG GSASCATCHV YVNEAFTDKV PAANEREIGM LESVTAELKP NSRLCCQIIM TPELDGIVVD VPDRQW

3. complex of cytochrome P450cam and its electron donor putidaredoxin, entity HEM (non-polymer), 616.487 Da
4. complex of cytochrome P450cam and its electron donor putidaredoxin, entity CAM (non-polymer), 152.233 × 7 Da
5. complex of cytochrome P450cam and its electron donor putidaredoxin, entity FES (non-polymer), 175.820 Da

Total weight

58737.12 Da

Max. entity weight

45476.42 Da

Entity Connection

covalent 5 Detail

---

ID	Type	Value order	Atom ID 1	Atom ID 2
1	covalent	sing	1:CYS347:SG	3:HEM1:FE
2	covalent	sing	2:CYS45:SG	5:FES1:FE1
3	covalent	sing	2:CYS39:SG	5:FES1:FE1
4	covalent	sing	2:CYS86:SG	5:FES1:FE2
5	covalent	sing	2:CYS48:SG	5:FES1:FE2

Source organism

Pseudomonas putida

Exptl. method

solution NMR

Refine. method

molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 52.7 %, Completeness: 18.0 %, Completeness (bb): 37.5 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polypeptide(L)

	Total	1H	15N
All	18.0 % (642 of 3571)	12.3 % (374 of 3048)	51.2 % (268 of 523)
Backbone	37.5 % (560 of 1495)	28.9 % (295 of 1019)	55.7 % (265 of 476)
Sidechain	4.0 % (83 of 2076)	3.9 % (80 of 2029)	6.4 % (3 of 47)
Aromatic	3.3 % (7 of 215)	3.3 % (7 of 209)	0.0 % (0 of 6)
Methyl	6.4 % (19 of 295)	6.4 % (19 of 295)

1. entity 1

LAPLPPHVPE HLVFDFDMYN PSNLSAGVQE AWAVLQESNV PDLVWTRCNG GHWIATRGQL IREAYEDYRH FSSECPFIPR EAGEAYDFIP TSMDPPEQRQ FRALANQVVG MPVVDKLENR IQELACSLIE SLRPQGQCNF TEDYAEPFPI RIFMLLAGLP EEDIPHLKYL TDQMTRPDGS MTFAEAKEAL YDYLIPIIEQ RRQKPGTDAI SIVANGQVNG RPITSDEAKR MCGLLLVGGL DTVVNFLSFS MEFLAKSPEH RQELIQRPER IPAACEELLR RFSLVADGRI LTSDYEFHGV QLKKGDQILL PQMLSGLDER ENACPMHVDF SRQKVSHTTF GHGSHLCLGQ HLARREIIVT LKEWLTRIPD FSIAPGAQIQ HKSGIVSGVQ ALPLVWDPAT TKAV

2. entity 2

SKVVYVSHDG TRRELDVADG VSLMQAAVSN GIYDIVGDCG GSASCATCHV YVNEAFTDKV PAANEREIGM LESVTAELKP NSRLCCQIIM TPELDGIVVD VPDRQW

Show sample condition

Sample

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 290 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	Camphor 5-monooxygenase	[U-95% 15N]		100 uM
2	Putidaredoxin	[U-95% 15N]		100 uM

Hide sample codition

Protein Blocks Logo

Calculated from 10 models in PDB: 2M56, Strand ID: A, B Detail

---

Release date

2013-08-13

Citation

The structure of the cytochrome p450cam-putidaredoxin complex determined by paramagnetic NMR spectroscopy and crystallography
Hiruma, Y., Hass, M.A.S., Kikui, Y., Liu, W., Olmez, B., Skinner, S.P., Blok, A., Kloosterman, A., Koteishi, H., Lohr, F., Schwalbe, H., Nojiri, M., Ubbink, M.
J. Mol. Biol. (2013), 425, 4353-4365, PubMed 23856620 , DOI 10.1016/j.jmb.2013.07.006 , Abstract

Related entities 1. complex of cytochrome P450cam and its electron donor putidaredoxin, entity 1, : 1 : 49 entities Detail

Related entities 2. complex of cytochrome P450cam and its electron donor putidaredoxin, entity 2, : 1 : 4 : 14 : 67 entities Detail

Interaction partners 1. complex of cytochrome P450cam and its electron donor putidaredoxin, entity 1, : 1 interactors Detail

Experiments performed 2 experiments Detail