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Human fibrillin1 EGF2-EGF3-hybrid1-cbEGF1
Authors
Robertson, I.B., Osuch, I., Jensen, S.A., Yadin, D.A., Handford, P.A., Redfield, C.
Assembly
fibrillin e2cb1
Entity
1. fibrillin e2cb1 (polymer, Thiol state: all disulfide bound), 177 monomers, 18849.39 Da Detail

SASRSIQHCN IRCMNGGSCS DDHCLCQKGY IGTHCGQPVC ESGCLNGGRC VAPNRCACTY GFTGPQCERD YRTGPCFTVI SNQMCQGQLS GIVSTKTLCC ATVGRAWGHP CEMCPAQPHP CRRGFIPNIR TGACQDVDEC QAIPGLCQGG NCINTVGSFE CKCPAGHKLN EVSQKCE


Formula weight
18849.39 Da
Entity Connection
disulfide 13 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing1:CYS9:SG1:CYS19:SG
2disulfidesing1:CYS13:SG1:CYS24:SG
3disulfidesing1:CYS26:SG1:CYS35:SG
4disulfidesing1:CYS40:SG1:CYS50:SG
5disulfidesing1:CYS44:SG1:CYS56:SG
6disulfidesing1:CYS58:SG1:CYS67:SG
7disulfidesing1:CYS76:SG1:CYS99:SG
8disulfidesing1:CYS85:SG1:CYS111:SG
9disulfidesing1:CYS100:SG1:CYS114:SG
10disulfidesing1:CYS121:SG1:CYS134:SG
11disulfidesing1:CYS140:SG1:CYS152:SG
12disulfidesing1:CYS147:SG1:CYS161:SG
13disulfidesing1:CYS163:SG1:CYS176:SG

Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealingsimulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.9 %, Completeness: 88.7 %, Completeness (bb): 95.5 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All88.7 % (1668 of 1881)87.3 % (857 of 982)89.2 % (634 of 711)94.1 % (177 of 188)
Backbone95.5 % (993 of 1040)95.6 % (349 of 365)95.3 % (485 of 509)95.8 % (159 of 166)
Sidechain82.6 % (823 of 996)82.3 % (508 of 617)83.2 % (297 of 357)81.8 % (18 of 22)
Aromatic62.0 % (62 of 100)82.0 % (41 of 50)40.8 % (20 of 49)100.0 % (1 of 1)
Methyl98.5 % (128 of 130)100.0 % (65 of 65)96.9 % (63 of 65)

1. e2cb1

SASRSIQHCN IRCMNGGSCS DDHCLCQKGY IGTHCGQPVC ESGCLNGGRC VAPNRCACTY GFTGPQCERD YRTGPCFTVI SNQMCQGQLS GIVSTKTLCC ATVGRAWGHP CEMCPAQPHP CRRGFIPNIR TGACQDVDEC QAIPGLCQGG NCINTVGSFE CKCPAGHKLN EVSQKCE

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4


#NameIsotope labelingTypeConcentration
1fibrillin e2cb1[U-13C; U-15N]1 mM
2calcium chloridenatural abundance5 mM
Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4


#NameIsotope labelingTypeConcentration
3fibrillin e2cb1[U-13C; U-15N]1 mM
4calcium chloridenatural abundance5 mM

LACS Plot; CA
Referencing offset: -0.2 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.2 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.01 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.25 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 5MS9, Strand ID: A Detail


Release date
2014-04-15
Citation
¹H, ¹³C and ¹⁵N resonance assignments for the fibrillin-1 EGF2-EGF3-hybrid1-cbEGF1 four-domain fragment
Robertson, I.B., Osuch, I., Yadin, D.A., Handford, P.A., Jensen, S.A., Redfield, C.
Biomol. NMR Assign. (2014), 8, 189-194, PubMed 23649688 , DOI 10.1007/s12104-013-9481-7 ,
Related entities 1. fibrillin e2cb1, : 1 : 2 : 432 entities Detail
Interaction partners 1. fibrillin e2cb1, : 23 interactors Detail
Experiments performed 12 experiments Detail
NMR combined restraints 8 contents Detail
Keywords calcium binding, EGF, epidermal growth factor like, fibrillin, hybrid domain, microfibril