Human fibrillin1 EGF2-EGF3-hybrid1-cbEGF1
SASRSIQHCN IRCMNGGSCS DDHCLCQKGY IGTHCGQPVC ESGCLNGGRC VAPNRCACTY GFTGPQCERD YRTGPCFTVI SNQMCQGQLS GIVSTKTLCC ATVGRAWGHP CEMCPAQPHP CRRGFIPNIR TGACQDVDEC QAIPGLCQGG NCINTVGSFE CKCPAGHKLN EVSQKCE
ID | Type | Value order | Atom ID 1 | Atom ID 2 |
---|---|---|---|---|
1 | disulfide | sing | 1:CYS9:SG | 1:CYS19:SG |
2 | disulfide | sing | 1:CYS13:SG | 1:CYS24:SG |
3 | disulfide | sing | 1:CYS26:SG | 1:CYS35:SG |
4 | disulfide | sing | 1:CYS40:SG | 1:CYS50:SG |
5 | disulfide | sing | 1:CYS44:SG | 1:CYS56:SG |
6 | disulfide | sing | 1:CYS58:SG | 1:CYS67:SG |
7 | disulfide | sing | 1:CYS76:SG | 1:CYS99:SG |
8 | disulfide | sing | 1:CYS85:SG | 1:CYS111:SG |
9 | disulfide | sing | 1:CYS100:SG | 1:CYS114:SG |
10 | disulfide | sing | 1:CYS121:SG | 1:CYS134:SG |
11 | disulfide | sing | 1:CYS140:SG | 1:CYS152:SG |
12 | disulfide | sing | 1:CYS147:SG | 1:CYS161:SG |
13 | disulfide | sing | 1:CYS163:SG | 1:CYS176:SG |
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 88.7 % (1668 of 1881) | 87.3 % (857 of 982) | 89.2 % (634 of 711) | 94.1 % (177 of 188) |
Backbone | 95.5 % (993 of 1040) | 95.6 % (349 of 365) | 95.3 % (485 of 509) | 95.8 % (159 of 166) |
Sidechain | 82.6 % (823 of 996) | 82.3 % (508 of 617) | 83.2 % (297 of 357) | 81.8 % (18 of 22) |
Aromatic | 62.0 % (62 of 100) | 82.0 % (41 of 50) | 40.8 % (20 of 49) | 100.0 % (1 of 1) |
Methyl | 98.5 % (128 of 130) | 100.0 % (65 of 65) | 96.9 % (63 of 65) |
1. e2cb1
SASRSIQHCN IRCMNGGSCS DDHCLCQKGY IGTHCGQPVC ESGCLNGGRC VAPNRCACTY GFTGPQCERD YRTGPCFTVI SNQMCQGQLS GIVSTKTLCC ATVGRAWGHP CEMCPAQPHP CRRGFIPNIR TGACQDVDEC QAIPGLCQGG NCINTVGSFE CKCPAGHKLN EVSQKCESolvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
3 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
4 | calcium chloride | natural abundance | 5 mM |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | na | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | na | indirect | 0.1013291 |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Home-built OMEGA - 950 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
3 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
4 | calcium chloride | natural abundance | 5 mM |
Bruker Avance - 500 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
3 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
4 | calcium chloride | natural abundance | 5 mM |
Home-built OMEGA - 950 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
2 | calcium chloride | natural abundance | 5 mM |
Home-built OMEGA - 750 MHz
State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 5.4
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
3 | fibrillin e2cb1 | [U-13C; U-15N] | 1 mM | |
4 | calcium chloride | natural abundance | 5 mM |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints, RDC restraints | combined_19078_5ms9.nef |
Input source #2: Coordindates | 5ms9.cif |
Diamagnetism of the molecular assembly | False (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | True (see coordinates for details) |
Whether the assembly has a other bond | True (see coodinates for details) |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
Ptnr_site_1 | Ptnr_site_2 | Redox_state_prediction_1 | Redox_state_prediction_2 | Distance (Å) |
---|---|---|---|---|
1:136:ASP:OD1 | 2:1:CA:CA | unknown | unknown | n/a |
1:136:ASP:OD2 | 2:1:CA:CA | unknown | unknown | n/a |
1:137:VAL:O | 2:1:CA:CA | unknown | unknown | n/a |
1:139:GLU:OE1 | 2:1:CA:CA | unknown | unknown | n/a |
1:139:GLU:OE2 | 2:1:CA:CA | unknown | unknown | n/a |
1:154:ASN:OD1 | 2:1:CA:CA | unknown | unknown | n/a |
1:155:THR:O | 2:1:CA:CA | unknown | unknown | n/a |
Non-standard residues
Chain_ID | Seq_ID | Comp_ID | Chem_comp_name | Experimental evidences |
---|---|---|---|---|
B | 1 | CA | CALCIUM ION | None |
Sequence alignments
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE -------110-------120-------130-------140-------150-------160-------170-------
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 177 | 0 | 0 | 100.0 |
Content subtype: combined_19078_5ms9.nef
Assigned chemical shifts
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQ.CQG.LSGIVSTKTLCC -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLC..GNCINTVGSFECKCPAGHKLNEVSQKCE
Comp_index_ID | Comp_ID | Atom_ID | CS value (ppm) |
---|---|---|---|
277 | HIS | HD1 | 7.023 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 711 | 624 | 87.8 |
1H chemical shifts | 982 | 832 | 84.7 |
15N chemical shifts | 198 | 170 | 85.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 354 | 332 | 93.8 |
1H chemical shifts | 365 | 340 | 93.2 |
15N chemical shifts | 166 | 154 | 92.8 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 357 | 292 | 81.8 |
1H chemical shifts | 617 | 492 | 79.7 |
15N chemical shifts | 32 | 16 | 50.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 68 | 63 | 92.6 |
1H chemical shifts | 68 | 66 | 97.1 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 49 | 20 | 40.8 |
1H chemical shifts | 50 | 41 | 82.0 |
15N chemical shifts | 1 | 1 | 100.0 |
Covalent bonds
Distance restraints
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ........CNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQ.CQG.LSGIVSTKTLCC -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLC..GNCINTVGSFECKCPAGHKLNEVSQKCE
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC || ||| ||||||||||| |||||||||||| ||||| | ||||| | |||||| || || | || ||||||||| .............MN..SCS...CLCQKGYIGTH.GQPVCESGCLNG...VAPNR.A..YGFTG.Q.ERDYRT..CF.VI.....Q..LS.IVSTKTLCC -------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE ||| | || || ||| ||| ||||| |||| | | || |||| || || ||| ATV.R.WG.........PH....GFI..IRT.ACQDV.....IPGL....N.I..VG.FECK..AG.KL.EVS -------220-------230-------240-------250-------260-------270-------280---
Dihedral angle restraints
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC ||||||||||||| ||| |||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ........CNIRCMNGGSCSD.HCL.QKGYIGTH..QPVC.SG.LNGGRCVAPNRCACTYGFTG.QCERDYRTGPCFTVISNQMCQGQ..GIVSTKTLCC -------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE |||| ||||||||||| |||||| ||||| |||||| ||| |||||||||||||||||||| ATVG.AWGHPCEMCPA.PHPCRR.FIPNI....CQDVDE..........GNC.NTVGSFECKCPAGHKLNEVS -------220-------230-------240-------250-------260-------270-------280---
RDC restraints
-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210 SASRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVISNQMCQGQLSGIVSTKTLCC ||| ||| |||| | | |||| | | ||||| |||| | | | | | | | || | | ||| | | | |||| ||| .........NIR..NGG..SDDH.L.Q.GYIG...G..V.ESGCL.GGRC.A.N..A.T..F.G..C.RD.R.G..FTV.S.Q...G.....VSTK.LCC -------220-------230-------240-------250-------260-------270-------280------- ATVGRAWGHPCEMCPAQPHPCRRGFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHKLNEVSQKCE |||||||| || || | ||||| ||||||||| | || ||| | ||||| | ||||||| | || ATVGRAWG...EM..AQ.H..RRGFI.....GACQDVDEC..I.GL....NCI.T.GSFEC.C..GHKLNEV.Q.CE